miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 9 ggcctgattcaagtaatccaggataggtt 37
|||||||||||||||||||||||||||||
Sbjct: 2 ggcctgattcaagtaatccaggataggtt 30
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ggcctgattcaagtaatccaggataggttggtt 41
|||||| |||||||||||||||||||| |||||
Sbjct: 2 ggcctggttcaagtaatccaggataggctggtt 34
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 ggcctgattcaagtaatccaggataggtt 37
|||||| ||||||||||||||||||||||
Sbjct: 2 ggcctggttcaagtaatccaggataggtt 30
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 8 tggcctgattcaagtaatccaggatagg 35
||||||| ||||||||||||||||||||
Sbjct: 1 tggcctggttcaagtaatccaggatagg 28
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gcctgattcaagtaatccaggataggtt 37
||||| ||||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggataggtt 30
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 gcctgattcaagtaatccaggataggttggtt 41
||||| |||||||||||||||||||| |||||
Sbjct: 3 gcctggttcaagtaatccaggataggctggtt 34
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gattcaagtaatccaggatagg 35
||||||||||||||||||||||
Sbjct: 7 gattcaagtaatccaggatagg 28
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 gcctgattcaagtaatccaggatagg 35
||||| ||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggatagg 28
