miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;CR847548.8/136623-136702 7955:Danio rerio
(zebrafish)
Length = 80
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgcatctg 74
||||||||||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttctgcatctg 78
>RF00644;mir-27;AAFR03027068.1/11019-11101 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgca 70
||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttctgca 77
>RF00644;mir-27;BAAF04040483.1/6623-6705 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgca 70
||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttctgca 77
>RF00644;mir-27;AAVX01114775.1/589-508 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgca 70
||||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttctgca 76
>RF00644;mir-27;AAPN01152921.1/1247-1165 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgc 69
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttctgc 76
>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 50 gtgttcacagtggctaagttc 70
>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttc 73
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 52 gtgttcacagtggctaagttc 72
>RF00644;mir-27;CT027840.6/2845-2927 7955:Danio rerio (zebrafish)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttct 67
|||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttct 74
>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 54 gtgttcacagtggctaagttc 74
>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
(zebra mbuna)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttc 73
>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttc 73
>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 gtgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttc 73
