miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00258;mir-130;AADN02034765.1/1070-992 9031:Gallus gallus
(chicken)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/73 (87%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 13 agccctttttgtgttgtactactgtccgctatggtgctgagcagtgcaatattaaaaagg 72
|||||||||| ||||||||||||| || || || |||||||||||||||| ||||||
Sbjct: 11 agccctttttctgttgtactactg---gcaattatgatgagcagtgcaatatt-aaaagg 66
Query: 73 gcattggctggca 85
|||||||||||||
Sbjct: 67 gcattggctggca 79
>RF00258;mir-130;AAVX01105962.1/740-661 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 33/34 (97%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 52 agcagtgcaatattaaaaagggcattggctggca 85
|||||||||||||||||| |||||||||||||||
Sbjct: 48 agcagtgcaatattaaaa-gggcattggctggca 80
>RF00258;mir-130;BX957246.7/158763-158685 7955:Danio rerio
(zebrafish)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 45 tgagcagtgcaatatt-aaaagggcattggctg 76
>RF00258;mir-130;AANH01004639.1/10330-10408 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 45 tgagcagtgcaatatt-aaaagggcattggctg 76
>RF00258;mir-130;AANH01010010.1/106554-106477 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 ccaaagccctttttgtgttgtactactgt 37
|||||||||||||| ||||||||||||||
Sbjct: 5 ccaaagccctttttctgttgtactactgt 33
Score = 50.1 bits (25), Expect = 5e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 43 tgagcagtgcaatatt-aaaagggcattggctg 74
>RF00258;mir-130;BAAE01282596.1/852-774 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 50.1 bits (25), Expect = 5e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 45 tgagcagtgcaatatt-aaaagggcattggctg 76
>RF00258;mir-130;BX927385.15/233521-233443 7955:Danio rerio
(zebrafish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 51 gagcagtgcaatattaaaaagggcattggctg 82
||||||||||||||| ||||||||||||||||
Sbjct: 46 gagcagtgcaatatt-aaaagggcattggctg 76
>RF00258;mir-130;ACDA01000792.1/530-452 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 51 gagcagtgcaatattaaaaagggcattggctg 82
||||||||||||||| ||||||||||||||||
Sbjct: 46 gagcagtgcaatatt-aaaagggcattggctg 76
