miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 73.8 bits (37), Expect = 3e-13
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 18 gctggtaaaatggaaccaaatcaacatttcaacggctttggtccccttcaaccagct 74
||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct: 15 gctggtaaaatggaaccaaatcaactattctatggatttggtccccttcaaccagct 71
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 6 tgccttgctggcgctggtaaaatggaaccaaatcaacatttcaac-ggctttggtcccct 64
|||||| |||| |||||||||| ||||||| |||||| | |||| || |||||||||||
Sbjct: 3 tgccttcctggggctggtaaaaaggaaccagatcaac--tacaactggatttggtcccct 60
Query: 65 tcaaccagct 74
||||||||||
Sbjct: 61 tcaaccagct 70
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 acggctttggtccccttcaaccagct 74
|||| |||||||||||||||||||||
Sbjct: 46 acggatttggtccccttcaaccagct 71
