miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;AAVX01101128.1/378-289 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 7 ctgtgctttatggctttttattcctatgtgattg 40
||||||||||||||||||||||||||||||||||
Sbjct: 9 ctgtgctttatggctttttattcctatgtgattg 42
>RF00246;mir-135;AAPN01269426.1/3344-3254 9258:Ornithorhynchus
anatinus (platypus)
Length = 91
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgattgcttctgtaacctcgcgtaggggtgaaagccatgg 74
|||||||||||||||||||||||||||| || | | ||| |||||| ||||||||||||
Sbjct: 17 tatggctttttattcctatgtgattgctgctttgaactcatgtagggctgaaagccatgg 76
>RF00246;mir-135;AADN02044924.1/11852-11762 9031:Gallus gallus
(chicken)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgattgctt 43
|||||||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgattgctt 45
>RF00246;mir-135;CR352232.20/105648-105557 7955:Danio rerio
(zebrafish)
Length = 92
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 ctgtgctttatggctttttattcctatgtgatt 39
||||||||||||||||| |||||||||||||||
Sbjct: 9 ctgtgctttatggctttctattcctatgtgatt 41
>RF00246;mir-135;AAPN01299361.1/1140-1229 9258:Ornithorhynchus
anatinus (platypus)
Length = 90
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 7 ctgtgctttatggctttttattcctatgtgat 38
||||||| ||||||||||||||||||||||||
Sbjct: 9 ctgtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;CAAB01002540.1/26990-26899 31033:Takifugu
rubripes
Length = 92
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 7 ctgtgctttatggctttttattcctatgtgat 38
|||||| |||||||||||||||||||||||||
Sbjct: 9 ctgtgcattatggctttttattcctatgtgat 40
>RF00246;mir-135;AAVX01218173.1/698-790 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 tgtgctttatggctttttattcctatgtgat 38
|||||| ||||||||||||||||||||||||
Sbjct: 10 tgtgctctatggctttttattcctatgtgat 40
>RF00246;mir-135;AADN02005966.1/161306-161395 9031:Gallus gallus
(chicken)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 tttatggctttttattcctatgtgat 38
||||||||||||||||||||||||||
Sbjct: 15 tttatggctttttattcctatgtgat 40
>RF00246;mir-135;ABRQ01460659.1/5464-5553 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AAWZ01006677.1/107967-108057 28377:Anolis
carolinensis (green anole)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;ABQF01031688.1/17601-17511 59729:Taeniopygia
guttata
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;AADN02056441.1/1410-1500 9031:Gallus gallus
(chicken)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>RF00246;mir-135;CR931939.21/9836-9927 7955:Danio rerio
(zebrafish)
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 ctgtgctttatggctttttattcctatgtgatt 39
||||| ||||||||||| |||||||||||||||
Sbjct: 9 ctgtgttttatggctttctattcctatgtgatt 41
>RF00246;mir-135;BAAE01018119.1/1524-1435 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgat 38
|||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtgat 40
>RF00246;mir-135;AAGU02576112.1/3465-3375 9785:Loxodonta africana
(African savanna elephant)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgattgct 42
|||||||||| |||||||||||||||||
Sbjct: 17 tatggcttttcattcctatgtgattgct 44
>RF00246;mir-135;CR381618.15/176832-176743 7955:Danio rerio
(zebrafish)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtga 37
||||||||||||||||||||||||
Sbjct: 16 ttatggctttttattcctatgtga 39
>RF00246;mir-135;AANH01001634.1/39339-39250 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgat 40
>RF00246;mir-135;AAPE01018078.1/3690-3601 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgattgc 41
|||||||||| ||||||||||||||||
Sbjct: 17 tatggcttttcattcctatgtgattgc 43
>RF00246;mir-135;BAAF04004921.1/4146-4237 8090:Oryzias latipes
(Japanese medaka)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 ttatggctttttattcctatgtgatt 39
|||||||||| |||||||||||||||
Sbjct: 16 ttatggctttctattcctatgtgatt 41
