miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00694;mir-137;AAFR03049204.1/9121-9021 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| ||||||||||||| ||||||| | |||||||||||||| |||||||||||||
Sbjct: 21 gacgggtattcttgggtagataataccaatggcgctgttattgcttgagaatacacgtag 80
Query: 76 ccggggggag 85
|| ||||||
Sbjct: 81 tcgaggggag 90
>RF00694;mir-137;AAPN01296459.1/4449-4348 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| ||||||||||||| |||||||| | |||||||||||||| ||||||| |||||
Sbjct: 21 gacgggtattcttgggtacataatacggatggcgctgttattgcttgagaatacgcgtag 80
>RF00694;mir-137;AL929343.7/129004-128905 7955:Danio rerio
(zebrafish)
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| |||||||||||| |||||||| || || ||||||||||||||||||| |||||
Sbjct: 21 gacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtag 80
>RF00694;mir-137;CAAK05033301.1/18518-18419 7955:Danio rerio
(zebrafish)
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| |||||||||||| |||||||| || || ||||||||||||||||||| |||||
Sbjct: 21 gacgggtattcttgggtggataatacggctctcgttgttattgcttaagaatacgcgtag 80
>RF00694;mir-137;BAAE01237923.1/971-872 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| |||||||||||| |||||||| || || ||||||||||||||||||| |||||
Sbjct: 21 gacgggtattcttgggtggataatacggatcacgttgttattgcttaagaatacgcgtag 80
>RF00694;mir-137;AADN02012896.1/32588-32489 9031:Gallus gallus
(chicken)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 16 gacgcgtattcttgggtaaataatacgtttcccgctgttattgcttaagaatacacgtag 75
|||| |||||||||||| |||||||| | || ||||||||||||||||||| |||||
Sbjct: 21 gacgggtattcttgggtggataatacggattacgttgttattgcttaagaatacgcgtag 80
>RF00694;mir-137;AADG05005118.1/28931-28831 7460:Apis mellifera
(honey bee)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 cgctgttattgcttaagaatacacgtag 75
|||||||||||||| |||||||||||||
Sbjct: 54 cgctgttattgcttgagaatacacgtag 81
>RF00694;mir-137;ABJB010513068.1/3224-3122 6945:Ixodes scapularis
(black-legged tick)
Length = 103
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 49 gctgttattgcttaagaatacacgtagccgg 79
||||||||||||| ||||||||||| |||||
Sbjct: 57 gctgttattgcttgagaatacacgtcgccgg 87
>RF00694;mir-137;AAZO01004444.1/55394-55292 121224:Pediculus
humanus corporis (human body louse)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 tgttattgcttaagaatacacgtagc 76
||||||||||| ||||||||||||||
Sbjct: 59 tgttattgcttgagaatacacgtagc 84
>RF00694;mir-137;ABLF01001266.1/4970-5069 7029:Acyrthosiphon pisum
(pea aphid)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 50 ctgttattgcttaagaatacacgtag 75
|||||||||||| |||||||||||||
Sbjct: 56 ctgttattgcttgagaatacacgtag 81
>RF00694;mir-137;BAAB01088495.1/2035-1935 7091:Bombyx mori
(domestic silkworm)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 tgttattgcttaagaatacacgtagc 76
||||||||||| ||||||||||||||
Sbjct: 57 tgttattgcttgagaatacacgtagc 82
>RF00694;mir-137;AAJJ01002111.1/15264-15166 7070:Tribolium
castaneum (red flour beetle)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 tgttattgcttaagaatacacgtagc 76
||||||||||| ||||||||||||||
Sbjct: 57 tgttattgcttgagaatacacgtagc 82
