miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00650;mir-153;ABRQ01035369.1/2287-2202 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 13 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 72
Query: 68 cattgg 73
||||||
Sbjct: 73 cattgg 78
>RF00650;mir-153;BAAE01047906.1/23-109 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgga 74
||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattgga 80
>RF00650;mir-153;AAWZ01013157.1/56717-56632 28377:Anolis
carolinensis (green anole)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||||||||
Sbjct: 50 agttgcatagtcacaaaagtgatcattgg 78
>RF00650;mir-153;ABQF01010730.1/5361-5446 59729:Taeniopygia
guttata
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||| ||||
Sbjct: 50 agttgcatagtcacaaaagtgatcgttgg 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gtcatttttgtgatttgcagct 30
||||||||||||||||||||||
Sbjct: 14 gtcatttttgtgatttgcagct 35
>RF00650;mir-153;AAGJ02018792.1/5926-5834 7668:Strongylocentrotus
purpuratus
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgat 67
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>RF00650;mir-153;AABS01000027.1/231997-232081 7719:Ciona
intestinalis
Length = 85
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||| ||||||||||||||
Sbjct: 49 agttgcatagtaacaaaagtgatcat 74
>RF00650;mir-153;AANH01011406.1/2584-2499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
|||||||||||||||||| |||||||
Sbjct: 50 agttgcatagtcacaaaaatgatcat 75
>RF00650;mir-153;BAAF04013663.1/2456-2371 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||| ||| ||||||
Sbjct: 50 agttgcatagtcacaaaaatgagcattgg 78
>RF00650;mir-153;ABJB010903342.1/3344-3261 6945:Ixodes scapularis
(black-legged tick)
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 51 ttgcatagtcacaaaagtgat 71
