miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttttgttcttcccgaccttaaaccatcgaccgttga 66
||||||||||||||||||||||||||||| |||| | | |||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttttgcgcttctgtaac--aaaccatcgaccgttga 64
Query: 67 ctgtacc 73
|||||||
Sbjct: 65 ctgtacc 71
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 ctcgatgaacattcaacgctgtcggtgagttttg 35
|||| |||||||||||||||||||||||||||||
Sbjct: 2 ctcggtgaacattcaacgctgtcggtgagttttg 35
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttttgt 36
|||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttttgt 36
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagtttt 34
||||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagtttt 34
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 atgaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||||
Sbjct: 7 atgaacattcaacgctgtcggtgagttt 34
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 9 aacattcaacgctgtcggtgagttttgt 36
||||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttttgt 36
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacct 74
|||||||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtacct 70
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacct 74
|||||||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtacct 70
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagtttt 34
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttt 34
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacc 73
||||||||||||||||||||||||
Sbjct: 45 aaaccatcgaccgttgactgtacc 68
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacc 73
||||||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtacc 69
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacc 73
||||||||||||||||||||||||
Sbjct: 49 aaaccatcgaccgttgactgtacc 72
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 aaccatcgaccgttgactgtacc 73
|||||||||||||||||||||||
Sbjct: 46 aaccatcgaccgttgactgtacc 68
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgaacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||||
Sbjct: 7 tgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacct 74
|||||||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtacct 70
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 aacattcaacgctgtcggtgagtttt 34
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttt 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacc 73
||||||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtacc 69
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aacattcaacgctgtcggtgagttt 33
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 gaacattcaacgctgtcggtgagttt 33
|||||||||| |||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaaccatcgaccgttgactgtacc 73
||||||||||||||||||||||||
Sbjct: 44 aaaccatcgaccgttgactgtacc 67
