miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
floridae (Florida lancelet)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 gtctatggcactggtagaattcactg 37
||||||||||||||||||||||||||
Sbjct: 16 gtctatggcactggtagaattcactg 41
>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
nigroviridis
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtttatggcactggtagaattcactgt 42
>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
intestinalis
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tatggcactggtagaattcactg 37
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
