miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;BAAE01125523.1/2749-2664 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 61.9 bits (31), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 7 ctgtctgatatgtttggtatataaggttgtatttgtggagacccaactatatatcaaaca 66
|||||||||||||||| ||||| |||||||| || || |||||||||||||||||||
Sbjct: 10 ctgtctgatatgtttgatatattaggttgtaattc---agtcccaactatatatcaaaca 66
Query: 67 tattc 71
|||||
Sbjct: 67 tattc 71
>RF00672;mir-190;ABQF01057687.1/1255-1341 59729:Taeniopygia
guttata
Length = 87
Score = 56.0 bits (28), Expect = 7e-08
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 7 ctgtctgatatgtttggtatataaggttgtatttgtggagacccaactatatatcaaaca 66
|||||||||||||||| |||| ||||||| || |||| | ||||||| ||||||||||
Sbjct: 10 ctgtctgatatgtttg--atattaggttgttttattggaaaaccaactaaatatcaaaca 67
Query: 67 tattctcacag 77
|||||| ||||
Sbjct: 68 tattcttacag 78
>RF00672;mir-190;AANN01313225.1/1014-1098 9365:Erinaceus europaeus
(western European hedgehog)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 ccaactatatatcaaacatattc 71
|||||||||||||||||||||||
Sbjct: 48 ccaactatatatcaaacatattc 70
>RF00672;mir-190;AAVX01574962.1/139-55 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 ccaactatatatcaaacatattc 71
|||||||||||||||||||||||
Sbjct: 48 ccaactatatatcaaacatattc 70
