miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtccgtggtctaggtagtttcatgttgttggggtttacgctccagatgtccgacagcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtccgtggtctaggtagtttcatgttgttggggtttacgctccagatgtccgacagcaga 68
Query: 61 aaactgcccggaccgcgcca 80
||||||||||||||||||||
Sbjct: 69 aaactgcccggaccgcgcca 88
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttggggtt 35
|||||| |||||||||||||||||||||||||
Sbjct: 12 cgtggtttaggtagtttcatgttgttggggtt 43
>RF00256;mir-196;BAAE01222104.1/303-214 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggggt 34
||||| ||||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggggt 42
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttgggg 33
||||| |||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttgggg 41
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 13 gtggtttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
|||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttgggg 41
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
|||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttgggg 41
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggggttta 37
|||||||||||||||||||||| ||||
Sbjct: 19 taggtagtttcatgttgttgggcttta 45
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
|||||||||||||||||||||||
Sbjct: 18 taggtagtttcatgttgttgggg 40
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
|||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttgggg 41
>RF00256;mir-196;AAGU02055285.1/1599-1508 9785:Loxodonta africana
(African savanna elephant)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttggg 40
>RF00256;mir-196;ABRQ01001823.1/1565-1475 9813:Procavia capensis
(cape rock hyrax)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttggg 40
>RF00256;mir-196;FJ497006.1/141864-141954 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 19 taggtagtttcatgttgttggg 40
