miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;AF464190.1/27447-27540 7757:Petromyzon marinus
(sea lamprey)
Length = 94
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 12 cgtggtctaggtagtttcatgttgttggg 40
>RF00256;mir-196;DQ481664.1/123101-123190 31033:Takifugu rubripes
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttgggt 33
||||| |||||||| ||||||||||||||
Sbjct: 13 gtggtttaggtagtctcatgttgttgggt 41
>RF00256;mir-196;AC149041.19/33709-33798 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 12 cgtggtttaggtagtctcatgttgttggg 40
>RF00256;mir-196;AB232922.1/118684-118594 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 12 cgtggtttaggtagtttcatgttgttggg 40
