miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 3 tccgtctccccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgca 62
|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 13 tccgtcgccccagtgttcagactacctgttcaggacaatgctgttgtacagtagtctgca 72
Query: 63 cattggttagactg 76
||||||||||||||
Sbjct: 73 cattggttagactg 86
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggattttactggtgtacagtagtctgcacattggtt 80
Query: 71 agac 74
||||
Sbjct: 81 agac 84
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggacaatattgttgtacagtagtctgcacattggtt 80
Query: 71 aga 73
|||
Sbjct: 81 aga 83
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggatcatactggtgtacagtagtctgcacattggtt 80
Query: 71 agactg 76
||||||
Sbjct: 81 agactg 86
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 80
Query: 71 ag 72
||
Sbjct: 81 ag 82
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 79
Query: 71 ag 72
||
Sbjct: 80 ag 81
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagtagtggttgtacagtagtctgcacattggtt 80
Query: 71 ag 72
||
Sbjct: 81 ag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
||||||||||||||||||||||||| | || || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaatcttcctggtgtacagtagtctgcacattggtt 80
Query: 71 agactg 76
||||||
Sbjct: 81 agactg 86
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggtta--atgttgtacagtagtctgcacattgg 68
||||||||||||||||||||||||||| | || | | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattgg 80
Query: 69 ttagactg 76
||||||||
Sbjct: 81 ttagactg 88
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 79.8 bits (40), Expect = 5e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggcgtagagattgtacagtagtctgcacattggtt 80
Query: 71 agactgag 78
|| |||||
Sbjct: 81 aggctgag 88
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 77.8 bits (39), Expect = 2e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatg-ttgtacagtagtctgcacattggt 69
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga-attagtgtttgtacagtagtctgcacattggt 78
Query: 70 tag 72
|||
Sbjct: 79 tag 81
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 75.8 bits (38), Expect = 7e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 3 tccgtctccccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgca 62
||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 12 tccgtctgcccagtgttcagactacctgttcaggactacgagattgtacagtagtctgca 71
Query: 63 cattggttag 72
||||||||||
Sbjct: 72 cattggttag 81
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 75.8 bits (38), Expect = 7e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| | || || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattatcatactggtgtacagtagtctgcacattggtt 80
Query: 71 agactg 76
||||||
Sbjct: 81 agactg 86
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggtt--aatgttgtacagtagtctgcacattgg 68
||||||||||||||||||||| |||||| || || | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgtccaggagattgcaaaggtgtacagtagtctgcacattgg 80
Query: 69 ttag 72
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/65 (90%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggtt---aatgttgtacagtagtctgcacattg 67
|||||||||||||||||||||||||| || | |||| |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggggctccgaatg-tgtacagtagtctgcacattg 79
Query: 68 gttag 72
|||||
Sbjct: 80 gttag 84
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/65 (90%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggagg---ttaatgttgtacagtagtctgcacattg 67
||||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctctcaacg-tgtacagtagtctgcacattg 79
Query: 68 gttag 72
|||||
Sbjct: 80 gttag 84
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 69.9 bits (35), Expect = 4e-12
Identities = 60/65 (92%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggtt---aatgttgtacagtagtctgcacattg 67
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg-ggttctgaatg-tgtacagtagtctgcacattg 78
Query: 68 gttag 72
|||||
Sbjct: 79 gttag 83
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 71 agactg 76
||||||
Sbjct: 81 agactg 86
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 67.9 bits (34), Expect = 2e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcattgtcatactggtgtacagtagtctgcacattggtt 80
Query: 71 agactg 76
||||||
Sbjct: 81 agactg 86
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 ccgtctccccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcac 63
|||||| ||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 13 ccgtctacccagtgtttagactacctgttcaggactcccaaattgtacagtagtctgcac 72
Query: 64 attggttag 72
|||||||||
Sbjct: 73 attggttag 81
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 65.9 bits (33), Expect = 7e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| || ||| | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcagactaaagctgaacagtagtctgcacattggtt 80
Query: 71 a 71
|
Sbjct: 81 a 81
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggagg-ttaatgttgtacagtagtctgcacattggt 69
||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 70 tag 72
|||
Sbjct: 81 tag 83
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 3 tccgtctccccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgca 62
||||||| ||||||||| |||||| |||||||||| | |||||||||||||||||
Sbjct: 12 tccgtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgca 71
Query: 63 cattggttag 72
||||||||||
Sbjct: 72 cattggttag 81
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| ||| | | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcaggctgcagctgaacagtagtctgcacattggtt 80
Query: 71 ag 72
||
Sbjct: 81 ag 82
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||||| || || | || |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatccggctacagctgaacagtagtctgcacattggtt 80
Query: 71 ag 72
||
Sbjct: 81 ag 82
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggagg--ttaatgttgtacagtagtctgcacattgg 68
|||||||||||||||||||||||||| || | ||| |||||||||||||||||| |||
Sbjct: 21 cccagtgttcagactacctgttcaggcggctgtgatg-tgtacagtagtctgcacactgg 79
Query: 69 ttag 72
||||
Sbjct: 80 ttag 83
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/65 (89%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggagg---ttaatgttgtacagtagtctgcacattg 67
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||
Sbjct: 21 cccagtgttcagacta-gtgttcaggaggctctgaatg-tgtacagtagtctgcacattg 78
Query: 68 gttag 72
|||||
Sbjct: 79 gttag 83
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggag---gttaatgttgtacagtagtctgcacattg 67
|||||||||||||||||||||||||| | | ||| |||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggcgcctctgcatg-tgtacagtagtctgcacattg 79
Query: 68 gttag 72
|||||
Sbjct: 80 gttag 84
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcagg 36
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 gtacagtagtctgcacattggttag 72
|||||||||||||||||||||||||
Sbjct: 60 gtacagtagtctgcacattggttag 84
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttcaggaggttaatgttgtacagtagtctgcacattggtt 70
|||||||||||||||||||||| |||| | |||| |||| ||||||||||| ||||
Sbjct: 20 cccagtgttcagactacctgttaaggacaatgtcgttgcacagcagtctgcacatcggtt 79
Query: 71 agactg 76
||||||
Sbjct: 80 agactg 85
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttca 34
||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttca 43
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 cccagtgttcagactacctgttc 33
|||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttc 43
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 acagtagtctgcacattggttag 72
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tgtacagtagtctgcacattggttag 72
|||||||||||| |||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttag 79
