miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 11 cccagtgttctgactacctgttcacgtgacaagcaaatgtacagtagtctgcacattggt 70
|||||||||| ||||||||||||| | | | | | ||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaggctgggacatgtacagtagtctgcacattggt 80
Query: 71 tagactggg 79
||| |||||
Sbjct: 81 taggctggg 89
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttagactggg 90
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactggg 88
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactggg 88
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactggg 88
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactggg 88
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactg 77
||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactg 86
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactg 77
||||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactg 86
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 58 tgtacagtagtctgcacattggttaggctggg 89
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 56 tgtacagtagtctgcacattggttaggctggg 87
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
|||||||||||||||||||||||||| |||||
Sbjct: 56 tgtacagtagtctgcacattggttaggctggg 87
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagac 75
||||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagac 84
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||||| ||||
Sbjct: 57 tgtacagtagtctgcacattggttagattggg 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 cgtctgcccagtgttctgactacctgttca 34
|||| ||||||||||| |||||||||||||
Sbjct: 15 cgtcggcccagtgttcagactacctgttca 44
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 gtacagtagtctgcacattggttagactggg 79
||||||||||||||||||||||||| |||||
Sbjct: 60 gtacagtagtctgcacattggttaggctggg 90
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 54.0 bits (27), Expect = 3e-07
Identities = 61/70 (87%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 5 cgtctgcccagtgttctgactacctgttcacgtgac-aagcaaatgtacagtagtctgca 63
|||||||||||||||| ||||||||||||| ||| | | | ||||||||||||||||
Sbjct: 14 cgtctgcccagtgttcagactacctgttca--ggactacgagattgtacagtagtctgca 71
Query: 64 cattggttag 73
||||||||||
Sbjct: 72 cattggttag 81
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactgg 78
|||||||||||||||||||||||||| ||||
Sbjct: 56 tgtacagtagtctgcacattggttaggctgg 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttca 34
||||||||||||| |||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactgg 78
|||||||||||||||||||||||||| ||||
Sbjct: 57 tgtacagtagtctgcacattggttaggctgg 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttca 34
||||||||||||| |||||||||||||
Sbjct: 18 ctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactgg 78
|||||||||||||||||||||||||| ||||
Sbjct: 56 tgtacagtagtctgcacattggttaggctgg 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttca 34
||||||||||||| |||||||||||||
Sbjct: 17 ctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactgg 78
|||||||||||||||||||||||||| ||||
Sbjct: 57 tgtacagtagtctgcacattggttaggctgg 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttca 34
||||||||||||| |||||||||||||
Sbjct: 18 ctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttag 73
||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttag 83
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttag 73
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 atgtacagtagtctgcacattggttagactggg 79
||||||||||||| ||||||||||||| |||||
Sbjct: 53 atgtacagtagtcagcacattggttaggctggg 85
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 48 tgtacagtagtctgcacattggttagactgggt 80
|||||||||||||||||| ||||||| ||||||
Sbjct: 58 tgtacagtagtctgcacactggttaggctgggt 90
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 cctcgtctgcccagtgttctgactacctgttca 34
||||| ||||||||||||| |||||||||||||
Sbjct: 11 cctcgcctgcccagtgttcagactacctgttca 43
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 cctcgtctgcccagtgttctgactacctgttca 34
||||| ||||||||||||| |||||||||||||
Sbjct: 12 cctcgcctgcccagtgttcagactacctgttca 44
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttagactggg 79
||||||||||||||||||||||| |||||
Sbjct: 60 acagtagtctgcacattggttaggctggg 88
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttca 34
||||||||||||| |||||||||||||
Sbjct: 18 ctgcccagtgttcagactacctgttca 44
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggtta 72
||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggtta 81
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 acagtagtctgcacattggttag 73
|||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttag 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 ctgcccagtgttctgactacctgttc 33
||||||||||||| ||||||||||||
Sbjct: 18 ctgcccagtgttcagactacctgttc 43
