miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPN01278105.1/215-140 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatggtggccgc 75
|||||||||||||||||||||||| |||||||
Sbjct: 44 ttctaatactgcctggtaatgatgatggccgc 75
>RF00241;mir-8;AAVX01012727.1/1238-1163 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 43 attctaatactgcctggtaatgatg 67
|||||||||||||||||||||||||
Sbjct: 43 attctaatactgcctggtaatgatg 67
>RF00241;mir-8;AAGW01121226.1/669-596 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
||||||||||||||||||||||||
Sbjct: 44 tctaatactgcctggtaatgatgg 67
>RF00241;mir-8;AADN02040853.1/30123-30198 9031:Gallus gallus
(chicken)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 44 ttctaatactgcctggtaatgatg 67
>RF00241;mir-8;CR925720.9/83468-83543 7955:Danio rerio (zebrafish)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 44 ttctaatactgcctggtaatgatg 67
>RF00241;mir-8;AAPY01315282.1/3050-2977 37347:Tupaia belangeri
(northern tree shrew)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 44 tctaatactgcctggtaatgatg 66
>RF00241;mir-8;AAYZ01293785.1/5589-5517 9978:Ochotona princeps
(American pika)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatgatg 65
>RF00241;mir-8;ABRQ01306924.1/2734-2660 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 44 tctaatactgcctggtaatgatg 66
>RF00241;mir-8;ABQF01059078.1/1300-1375 59729:Taeniopygia guttata
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatg 67
>RF00241;mir-8;CU855953.4/78255-78183 7955:Danio rerio (zebrafish)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatgatg 65
>RF00241;mir-8;BAAE01261092.1/748-823 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 45 tctaatactgcctggtaatgatg 67
>RF00241;mir-8;AAPE01343286.1/476-400 59463:Myotis lucifugus
(little brown bat)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ctaatactgcctggtaatgatg 67
||||||||||||||||||||||
Sbjct: 47 ctaatactgcctggtaatgatg 68
>RF00982;mir-200;AACT01017089.1/11032-10948 51511:Ciona savignyi
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 taatactgcctggtaatgatg 67
|||||||||||||||||||||
Sbjct: 49 taatactgcctggtaatgatg 69
>RF00241;mir-8;AY865826.1/65-141 9593:Gorilla gorilla (Western
Gorilla)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatggtggcc 73
|||||||||||| ||||||||||| ||||
Sbjct: 46 tctaatactgccgggtaatgatggaggcc 74
>RF00241;mir-8;ABRQ01038382.1/145-67 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatggtggcc 73
|||||||||||| ||||||||||| ||||
Sbjct: 48 tctaatactgccgggtaatgatggaggcc 76
>RF00241;mir-8;ABEP02030441.1/32113-32038 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 attctaatactgcctggtaatgatg 67
|||| ||||||||||||||||||||
Sbjct: 43 attcaaatactgcctggtaatgatg 67
