miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00696;mir-203;BAAE01000181.1/2185-2106 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 83.8 bits (42), Expect = 4e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 17 agtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAFR03013559.1/2925-3004 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 12 ccagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAVX01234553.1/1127-1048 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 13 cagtggttctaatcagttcaacagttctctatcgaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAYZ01488695.1/188-267 9978:Ochotona princeps
(American pika)
Length = 80
Score = 75.8 bits (38), Expect = 9e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 ccgggcccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttagg 68
||||| ||||||||||| | ||||||||||||||| | | | ||||||||||||||||||
Sbjct: 6 ccgggtccagtggttcttagcagttcaacagttctgtagcgcaattgtgaaatgtttagg 65
Query: 69 accact 74
||||||
Sbjct: 66 accact 71
>RF00696;mir-203;ABQO010581221.1/929-850 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | | |||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctattaaaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;BX255913.8/25815-25737 7955:Danio rerio
(zebrafish)
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 ggcccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggacc 71
|||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 9 ggccgagtggttctcaacagttcaacagttcttttga-tgattgtgaaatgttcaggacc 67
Query: 72 act 74
|||
Sbjct: 68 act 70
>RF00696;mir-203;CT027758.7/42576-42497 7955:Danio rerio
(zebrafish)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAVX01626047.1/560-639 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 13 cagtggttttcaacagttcaacagttctttattaacattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AADN02003787.1/117406-117485 9031:Gallus gallus
(chicken)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccact 71
>RF00696;mir-203;CAAB01000784.1/57207-57130 31033:Takifugu
rubripes
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 tgtgaaatgtttaggaccactgg 76
|||||||||||||||||||||||
Sbjct: 49 tgtgaaatgtttaggaccactgg 71
