miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00696;mir-203;AAVX01234553.1/1127-1048 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 gtgcagtggttctaatcagttcaacagttctctatcgaaattgtgaaatgtttaggacca 69
Query: 73 cttgac 78
||||||
Sbjct: 70 cttgac 75
>RF00696;mir-203;AADN02003787.1/117406-117485 9031:Gallus gallus
(chicken)
Length = 80
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10 gtgcagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggacca 69
Query: 73 cttgac 78
||||||
Sbjct: 70 cttgac 75
>RF00696;mir-203;CT027758.7/42576-42497 7955:Danio rerio
(zebrafish)
Length = 80
Score = 75.8 bits (38), Expect = 8e-14
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 10 gtgcagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggacca 69
Query: 73 cttgac 78
||||||
Sbjct: 70 cttgac 75
>RF00696;mir-203;AAVX01626047.1/560-639 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||| | | ||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 10 gtgcagtggttttcaacagttcaacagttctttattaacattgtgaaatgtttaggacca 69
Query: 73 cttga 77
|||||
Sbjct: 70 cttga 74
>RF00696;mir-203;AAYZ01488695.1/188-267 9978:Ochotona princeps
(American pika)
Length = 80
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttagcagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;ABQO010581221.1/929-850 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 10 gtgcagtggttcttaacagttcaacagttctattaaaaaattgtgaaatgtttaggacca 69
Query: 73 ct 74
||
Sbjct: 70 ct 71
>RF00696;mir-203;AAFR03013559.1/2925-3004 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccactt 75
|||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccactt 72
Query: 76 ga 77
||
Sbjct: 73 ga 74
>RF00696;mir-203;BAAE01000181.1/2185-2106 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccacttg 76
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 73
Query: 77 ac 78
||
Sbjct: 74 ac 75
>RF00696;mir-203;BX255913.8/25815-25737 7955:Danio rerio
(zebrafish)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaa-attgtgaaatgtttaggaccactt 75
||||||||| | ||||||||||||||| | ||| ||||||||||||| ||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttcttt--tgatgattgtgaaatgttcaggaccactt 71
Query: 76 ga 77
||
Sbjct: 72 ga 73
