miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctgtaatc 36
||||||||||||||||||||||| ||||
Sbjct: 27 ttccctttgtcatcctatgcctggaatc 54
>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
(chicken)
Length = 74
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 10 ttccctttgtcatcctatgcctg 32
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus
(chicken)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 28 ttccctttgtcatcctatgcctg 50
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttccctttgtcatcctatgcctg 31
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
