miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 26 gtccttcattccaccggagtctgtc 50
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgtc 51
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 26 gtccttcattccaccggagtctgtc 50
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgtc 33
|||||||||||||||||||||||||
Sbjct: 23 gtccttcattccaccggagtctgtc 47
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgt 32
||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgt 50
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgt 32
||||||||||||||||||||||||
Sbjct: 27 gtccttcattccaccggagtctgt 50
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 gtccttcattccaccggagtctgt 32
||||||||||||||||||||||||
Sbjct: 26 gtccttcattccaccggagtctgt 49
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tccttcattccaccggagtctgt 32
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AADN02039786.1/62073-62174 9031:Gallus gallus
(chicken)
Length = 102
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ccttcattccaccggagtctgtcag 35
|||||||||||||||| ||||||||
Sbjct: 29 ccttcattccaccggaatctgtcag 53
