miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggatagtgatggattgccatcagttcttaatgcattg 66
||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct: 30 gatactgcatcaggaactgattggataaaaatgggtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 61.9 bits (31), Expect = 9e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggatagtgatggattgccatcagttcttaatgcattg 66
||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct: 30 gatactgcatcaggaactgattggataagaatgggtcaccatcagttcctaatgcattg 88
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 7 ggatactgcatcaggaactgattggata 34
||||||||||||||||||||||||||||
Sbjct: 29 ggatactgcatcaggaactgattggata 56
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggata 56
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggata 56
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggat 33
||||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggat 55
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 28 gatactgcatcaggaactgattgg 51
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tactgcatcaggaactgattggat 33
||||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattggat 34
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattg 30
|||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattg 52
>RF00673;mir-217;AAIY01412982.1/1242-1137 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 tactgcatcaggaactgattggata 34
||||||||||||||||||| |||||
Sbjct: 32 tactgcatcaggaactgatcggata 56
>RF00673;mir-217;AANH01011241.1/45727-45622 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgga 32
|||||||||||||||||||| ||||
Sbjct: 30 gatactgcatcaggaactgaatgga 54
