miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 9 ggttttcctttgtgcttgatctaaccatg 37
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 9 ggttttcctttgtgcttgatctaaccatg 37
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcaccacgg 79
|||||||||||||||||||||||
Sbjct: 60 catggttctgtcaagcaccacgg 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 12 tttcctttgtgcttgatctaaccatg 37
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 11 ttttctgttgtgcttgatctaaccatg 37
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
|||| ||||||||||||||||||||||
Sbjct: 11 tttttcgttgtgcttgatctaaccatg 37
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 12 tttcctttgtgcttgatctaaccatg 37
