miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00878;mir-456;BX004877.10/47607-47503 7955:Danio rerio
(zebrafish)
Length = 105
Score = 69.9 bits (35), Expect = 5e-12
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 10 gtgtgcaggcatctttccagcctacacgtggggtcctgattctgcaggctggttagatgg 69
|||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||
Sbjct: 20 gtgtgcaggcatctttccagtctacatgtggatccaggagtctgcaggctggttagatgg 79
Query: 70 ttgtcac 76
|||||||
Sbjct: 80 ttgtcac 86
>RF00878;mir-456;AAWZ01005369.1/34970-35074 28377:Anolis
carolinensis (green anole)
Length = 105
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 14 gcaggcatctttccagcctacacgtggggtcctgattctgcaggctggttagatggttgt 73
||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct: 24 gcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttagatggttgt 83
Query: 74 ca 75
||
Sbjct: 84 ca 85
>RF00878;mir-456;ABQF01042287.1/70108-70005 59729:Taeniopygia
guttata
Length = 104
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 14 gcaggcatctttccagcctacacgtggggtcctgattctgcaggctggttagatggttgt 73
||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct: 23 gcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttagatggttgt 82
Query: 74 ca 75
||
Sbjct: 83 ca 84
>RF00878;mir-456;AADN02011847.1/76016-76127 9031:Gallus gallus
(chicken)
Length = 112
Score = 67.9 bits (34), Expect = 2e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 14 gcaggcatctttccagcctacacgtggggtcctgattctgcaggctggttagatggttgt 73
||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||||||
Sbjct: 31 gcaggcatcttctcagcctacatgtggattcctaaatctgcaggctggttagatggttgt 90
Query: 74 ca 75
||
Sbjct: 91 ca 92
>RF00878;mir-456;BAAF04097110.1/5066-4963 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 50 tctgcaggctggttagatggttgtcacat 78
|||||||||||||||||||||||||||||
Sbjct: 59 tctgcaggctggttagatggttgtcacat 87
>RF00878;mir-456;AAVX01070382.1/1647-1544 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 14 gcaggcatctttccagcctacacgtggggtcctgat-tctgcaggctggttagatggttg 72
||||| ||||| ||||||||||||| || |||||| |||||||||||||| ||||||||
Sbjct: 23 gcaggtatcttcccagcctacacgtagg-tcctgaaatctgcaggctggtttgatggttg 81
Query: 73 tc 74
||
Sbjct: 82 tc 83
