miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatgta 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccatactgaatgaaaatgctatggaatgttaagaagtatgta 69
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 52.0 bits (26), Expect = 7e-07
Identities = 55/61 (90%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatactgaa--tgccaatgctatggaatgttaagaagtatgt 58
|||||||||||||||||||||| |||| ||| || |||||||||||| |||||||||||
Sbjct: 11 catacttctttatatgcccata-tgaacctgctaa-gctatggaatgtaaagaagtatgt 68
Query: 59 a 59
|
Sbjct: 69 a 69
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 52.0 bits (26), Expect = 7e-07
Identities = 55/61 (90%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatactgaa--tgccaatgctatggaatgttaagaagtatgt 58
|||||||||||||||||||||| |||| || |||| ||||||||||| |||||||||||
Sbjct: 11 catacttctttatatgcccata-tgaacctggcaat-ctatggaatgtaaagaagtatgt 68
Query: 59 a 59
|
Sbjct: 69 a 69
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 31 caatgctatggaatgttaagaagtatgta 59
|||||||||||||||| ||||||||||||
Sbjct: 41 caatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 aatgctatggaatgttaagaagtatgta 59
||||||||||||||| ||||||||||||
Sbjct: 42 aatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 32 aatgctatggaatgttaagaagtatgta 59
||||||||||||||| ||||||||||||
Sbjct: 41 aatgctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgttaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 50 tatggaatgttaagaagtatgta 72
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 4e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 37 tatggaatgttaagaagtatgta 59
|||||||||||||||||||||||
Sbjct: 49 tatggaatgttaagaagtatgta 71
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 4e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccatactgaatgccaatgctatggaatgttaagaagtatgta 59
|||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaaatgctt-tgctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccata 22
||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccata 32
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgttaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 44 gctatggaatgtaaagaagtatgta 68
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 catacttctttatatgcccata 22
||||||||||||||||||||||
Sbjct: 11 catacttctttatatgcccata 32
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgttaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgttaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 45 gctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 42.1 bits (21), Expect = 7e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 31 caatgctatggaatgttaagaagtatgta 59
||||| |||||||||| ||||||||||||
Sbjct: 41 caatgttatggaatgtaaagaagtatgta 69
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgttaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 46 gctatggaatgtaaagaagtatgta 70
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 gctatggaatgttaagaagtatgta 59
|||||||||||| ||||||||||||
Sbjct: 44 gctatggaatgtaaagaagtatgta 68
