miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 2 cagttccaaagtgctcatagtgcaggtagttgtattca--tg-ttctactgtaatatggg 58
|||| |||||||||||||||||||||||||| | |||| || |||||||||||| ||||
Sbjct: 7 cagtaccaaagtgctcatagtgcaggtagtttttttcaattgattctactgtaatgtggg 66
Query: 59 cacttacagtact 71
|||||||||||||
Sbjct: 67 cacttacagtact 79
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 60.0 bits (30), Expect = 4e-09
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagttgtattcatg-ttctactgtaatatgggcacttac 65
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt-ttggcatgactctactgtaatatgggcacttcc 70
Query: 66 agtact 71
||||||
Sbjct: 71 agtact 76
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 43 tctactgtaatatgggcacttacagtactgc 73
||||||||||| |||||||||||||||||||
Sbjct: 50 tctactgtaatgtgggcacttacagtactgc 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtagtt 32
|||||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;BX511227.7/25357-25277 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gcagttccaaagtgctcatagtgcaggtagt 31
|||||||||||||||||| ||||||||||||
Sbjct: 6 gcagttccaaagtgctcacagtgcaggtagt 36
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;ABRO01259691.1/1321-1238 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagttgtattca-tgttctactgtaatatgggcacttac 65
||||||||||||||||||| |||||| | || || ||||||||| ||||||||||| |
Sbjct: 12 ccaaagtgctcatagtgcacgtagttttgggcattgctctactgtagtatgggcacttcc 71
Query: 66 agtact 71
||||||
Sbjct: 72 agtact 77
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtagtt 37
>RF00051;mir-17;AADN02013295.1/150-68 9031:Gallus gallus (chicken)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 44 ctactgtaatatgggcacttacagtactg 72
|||||||||| ||||||||||||||||||
Sbjct: 49 ctactgtaatgtgggcacttacagtactg 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
||||||||||||||||||||||||
Sbjct: 12 ccaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AANH01005996.1/21109-21189 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 4 gttccaaagtgctcatagtgcaggtag 30
||||||||||||||| |||||||||||
Sbjct: 9 gttccaaagtgctcacagtgcaggtag 35
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gcagttccaaagtgctcatagtgcaggtag 30
||||| |||||||||||| |||||||||||
Sbjct: 6 gcagtaccaaagtgctcacagtgcaggtag 35
>RF00051;mir-17;AAEX02004024.1/7928-8010 9615:Canis lupus
familiaris (dog)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagt 31
|||||||||||| ||||||||||||
Sbjct: 12 ccaaagtgctcacagtgcaggtagt 36
