miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00257;mir-194;AAFC03085979.1/1394-1478 9913:Bos taurus (cattle)
Length = 85
Score = 75.8 bits (38), Expect = 7e-14
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactt---gtccttttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttacttttg 74
Query: 72 atgg 75
||||
Sbjct: 75 atgg 78
>RF00257;mir-194;AY866323.1/164-248 9545:Macaca nemestrina
(pig-tailed macaque)
Length = 85
Score = 75.8 bits (38), Expect = 7e-14
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>RF00257;mir-194;AAIY01186786.1/2214-2298 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 75.8 bits (38), Expect = 7e-14
Identities = 58/62 (93%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggact-tgtcct-tttccagtggagatgctgttacttttga 72
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtggactgtgtctaatttccagtggagatgctgttacttttga 75
Query: 73 tg 74
||
Sbjct: 76 tg 77
>RF00257;mir-194;AANN01206173.1/2762-2845 9365:Erinaceus europaeus
(western European hedgehog)
Length = 84
Score = 69.9 bits (35), Expect = 4e-12
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct-tttccagtggagatgctgttacttttg 71
||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtacaatttccagtggagatgctgttatttttg 73
Query: 72 atg 74
|||
Sbjct: 74 atg 76
>RF00257;mir-194;AAPN01089469.1/14273-14191 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggacttgtcct--tttccagtggagatgctgttacttttga 72
|||||||||||||||||||||| || | || ||||||||||||| ||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga-ttatgctgatttccagtggagaggctgttacttttga 73
Query: 73 tgga 76
||||
Sbjct: 74 tgga 77
>RF00257;mir-194;CAAA01010876.1/4210-4293 10090:Mus musculus
(house mouse)
Length = 84
Score = 65.9 bits (33), Expect = 7e-11
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 9 atcgggtgtaacagcaactccatgtggact-tg-tccttttccagtggagatgctgttac 66
|||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct: 9 atcgggtgtaacagcaactccatgtggactgtgctcggattccagtggagctgctgttac 68
Query: 67 ttttgatgg 75
|| ||||||
Sbjct: 69 ttctgatgg 77
>RF00257;mir-194;AAWZ01016377.1/110498-110415 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 56.0 bits (28), Expect = 7e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggactt-gtccttttccagtggagatgctgttacttttga 72
||||||||||||||||||||||| | || |||||||||||| |||||||||||||||
Sbjct: 15 gtgtaacagcaactccatgtggaataagtagatttccagtggaggtgctgttacttttga 74
>RF00257;mir-194;AADN02012132.1/23965-23883 9031:Gallus gallus
(chicken)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgat 73
||||||||||||||||||||||||||||
Sbjct: 47 ttccagtggagatgctgttacttttgat 74
>RF00257;mir-194;AALT01482191.1/6150-6232 42254:Sorex araneus
(European shrew)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 49/55 (89%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtgga-cttgtccttttccagtggagatgctgttact 67
||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggaccgtgtccaagcccagtggagatgctgttact 68
>RF00257;mir-194;ABRO01051746.1/2439-2355 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 tatcgggtgtaacagcaactccatgtggact 38
|||| ||||||||||||||||||||||||||
Sbjct: 8 tatcaggtgtaacagcaactccatgtggact 38
>RF00257;mir-194;AAGU02014260.1/2999-2915 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgatgg 75
||||||||| ||||||||||||||||||||
Sbjct: 49 ttccagtggggatgctgttacttttgatgg 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggac 37
|||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtggac 37
>RF00257;mir-194;AAPN01023116.1/334-252 9258:Ornithorhynchus
anatinus (platypus)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>RF00257;mir-194;AAGV020435009.1/201-286 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAFC03033465.1/1804-1720 9913:Bos taurus (cattle)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRN01259841.1/10643-10728 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AC127556.4/107031-107116 10090:Mus musculus
(house mouse)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRO01037016.1/11275-11359 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAYZ01125558.1/495-410 9978:Ochotona princeps
(American pika)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AAIY01704218.1/1027-942 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;ABRQ01130986.1/8094-8179 9813:Procavia capensis
(cape rock hyrax)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;BX248510.4/109392-109307 7955:Danio rerio
(zebrafish)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;CAAB01000046.1/113108-113195 31033:Takifugu
rubripes
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;AANH01000564.1/249696-249610 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>RF00257;mir-194;BAAE01291848.1/854-770 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
