miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 225 tattttgggacagatattttgggacggagggagtac 260
||||||||||||| ||||||||||||||||||||||
Sbjct: 81 tattttgggacagttattttgggacggagggagtac 116
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagta 259
|||||||||||||||||||||||||||
Sbjct: 75 gacagatattttgggacggagggagta 101
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 228 tttgggacagatattttgggacggagggagtaca 261
|||| ||||| |||||||||||||||||||||||
Sbjct: 70 tttgagacagttattttgggacggagggagtaca 103
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagtacat 262
||||| ||||||||||||||||||||||||
Sbjct: 75 gacagttattttgggacggagggagtacat 104
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa Indica
Group
Length = 156
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtacata 263
||||||||||||||||||||||||||
Sbjct: 131 atattttgggacggagggagtacata 156
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtacat 262
|||||||||||||||||||||||||
Sbjct: 97 atattttgggacggagggagtacat 121
>RF00906;MIR1122;AACV01003177.1/25234-25117 39947:Oryza sativa
Japonica Group
Length = 118
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtacat 262
|||||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtacat 2
>RF00906;MIR1122;AACV01003040.1/15315-15426 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtacat 262
|||||||||||||||||||||||||
Sbjct: 87 atattttgggacggagggagtacat 111
>RF00906;MIR1122;AACV01021306.1/37655-37776 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtaca 261
||||||||||||||||||||||||
Sbjct: 97 atattttgggacggagggagtaca 120
>RF00906;MIR1122;AAAA02012151.1/19064-18908 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtaca 261
||||||||||||||||||||||||
Sbjct: 132 atattttgggacggagggagtaca 155
>RF00906;MIR1122;AAAA02034673.1/6609-6720 39946:Oryza sativa Indica
Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtaca 261
||||||||||||||||||||||||
Sbjct: 87 atattttgggacggagggagtaca 110
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtaca 261
||||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtaca 3
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagta 259
||||| |||||||||||||||||||||
Sbjct: 123 gacagttattttgggacggagggagta 149
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 240 attttgggacggagggagtacat 262
|||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtacat 2
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagtacata 263
||||| |||||||||||||||| ||||||||
Sbjct: 75 gacagttattttgggacggaggaagtacata 105
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 240 attttgggacggagggagtacat 262
|||||||||||||||||||||||
Sbjct: 113 attttgggacggagggagtacat 135
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 233 gacagatattttgggacggagggagta 259
||||| |||||||||||||||||||||
Sbjct: 31 gacagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagta 259
||||| |||||||||||||||||||||
Sbjct: 75 gacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 233 gacagatattttgggacggagggagta 259
||||| |||||||||||||||||||||
Sbjct: 31 gacagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 233 gacagatattttgggacggagggagta 259
||||| |||||||||||||||||||||
Sbjct: 75 gacagttattttgggacggagggagta 101
>RF00906;MIR1122;AAAA02002553.1/2264-2375 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 87 atattttgggacggagggagtac 109
>RF00906;MIR1122;AAAA02031697.1/13340-13228 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 88 atattttgggacggagggagtac 110
>RF00906;MIR1122;AP003725.3/107083-106927 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 110 atattttgggacggagggagtac 132
>RF00906;MIR1122;AAAA02033081.1/3802-3711 39946:Oryza sativa Indica
Group
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AC090873.4/89374-89493 4530:Oryza sativa (rice)
Length = 120
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AAAA02034725.1/24676-24788 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 88 atattttgggacggagggagtac 110
>RF00906;MIR1122;AAAA02006215.1/494-605 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 239 tattttgggacggagggagtaca 261
|||||||||||||||||||||||
Sbjct: 88 tattttgggacggagggagtaca 110
>RF00906;MIR1122;AAAA02006623.1/10234-10353 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 95 atattttgggacggagggagtac 117
>RF00906;MIR1122;AP005586.3/39119-39252 39947:Oryza sativa Japonica
Group
Length = 134
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 109 atattttgggacggagggagtac 131
>RF00906;MIR1122;CT832702.1/1285-1384 39946:Oryza sativa Indica
Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 75 atattttgggacggagggagtac 97
>RF00906;MIR1122;AP003267.3/20551-20679 39947:Oryza sativa Japonica
Group
Length = 129
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 104 atattttgggacggagggagtac 126
>RF00906;MIR1122;AAAA02015207.1/7418-7517 39946:Oryza sativa Indica
Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
Indica Group
Length = 153
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AAAA02016947.1/4733-4836 39946:Oryza sativa Indica
Group
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AP004994.2/80471-80627 39947:Oryza sativa Japonica
Group
Length = 157
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 132 atattttgggacggagggagtac 154
>RF00906;MIR1122;AP008210.1/24813715-24813809 39947:Oryza sativa
Japonica Group
Length = 95
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 70 atattttgggacggagggagtac 92
>RF00906;MIR1122;AAAA02018654.1/14883-14772 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 26 atattttgggacggagggagtac 4
>RF00906;MIR1122;AC120987.2/63054-63157 39947:Oryza sativa Japonica
Group
Length = 104
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 79 atattttgggacggagggagtac 101
>RF00906;MIR1122;AAAA02017713.1/95926-95807 39946:Oryza sativa
Indica Group
Length = 120
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 236 agatattttgggacggagggagtacat 262
||||||| |||||||||||||||||||
Sbjct: 93 agatattatgggacggagggagtacat 119
>RF00906;MIR1122;AP008209.1/32841988-32841849 39947:Oryza sativa
Japonica Group
Length = 140
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 238 atattttgggacggagggagtac 260
|||||||||||||||||||||||
Sbjct: 115 atattttgggacggagggagtac 137
