miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 165 bits (83), Expect = 2e-40
Identities = 99/103 (96%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 31 actgcattacttgcaagaaagtcacaaaatcaattgcagga-catacttgtggttttctt 89
||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 90 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 165
Score = 97.6 bits (49), Expect = 4e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 1 gcatatggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 57
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 2 gcatatggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 113 bits (57), Expect = 6e-25
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1 gcatatggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcatatggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 97.6 bits (49), Expect = 4e-20
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 72 catacttgtggttttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 124
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 95.6 bits (48), Expect = 1e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 10 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 57
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 97.6 bits (49), Expect = 4e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 72 catacttgtggttttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 131
||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 111 catacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctcccttt 170
Query: 132 g 132
|
Sbjct: 171 g 171
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 10 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 57
|||| ||||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1 gcatatggtggcaccaagcatgaggcaggaactgcattacttg 43
|||| ||| |||||||||||||||||| ||||||| ||||||
Sbjct: 2 gcatgtggcggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 83 ttttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 77 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttg 126
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 83 ttttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 79 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttg 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 83 ttttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 124
|||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 84 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 127
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 gcatatggtggcaccaagcatgaggcaggaactgcattacttgcaag 47
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 gcatatggtggcaccaagcatgaggttacaactgcattacttgcaag 48
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 83.8 bits (42), Expect = 5e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 83 ttttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
|||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 77 ttttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttg 126
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 90 gcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttg 132
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 69.9 bits (35), Expect = 8e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 86 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttg 132
||||||||||| |||||||| |||||||||||| |||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttg 127
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 85 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 127
|||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 10 ggcaccaagcatgaggcaggaactgcattacttgcaagaa 49
|||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
