miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 168 bits (85), Expect = 9e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 10 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaa 60
Query: 70 ctatacaacctgctgcctttcttag 94
|||||||||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 101 bits (51), Expect = 2e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 16 agaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaactatac 75
||||||||| ||||||||||||| |||||||||||||||| | |||||| |||||||||
Sbjct: 7 agaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataactatac 66
Query: 76 aacctgctgcctttc 90
|||||||||||||||
Sbjct: 67 aacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 65.9 bits (33), Expect = 9e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 26 ggttgcatagttttagggcagggattttgctcacaaggaggtaactatacaacctgctgc 85
||||||||||||||||||||| | ||||| ||| |||||||| ||||| |||||||||
Sbjct: 17 ggttgcatagttttagggcagcggttttgtccactaggaggtacctatatgacctgctgc 76
Query: 86 ctttc 90
|||||
Sbjct: 77 ctttc 81
>RF00027;let-7;AAGW01052945.1/1566-1484 9986:Oryctolagus cuniculus
(rabbit)
Length = 83
Score = 65.9 bits (33), Expect = 9e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 40 agggcagggattttgctcacaaggaggtaactatacaacctgctgcctttctt 92
||||||| ||||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct: 29 agggcagagattttgctcacaagaaggtaactctacgacctgcagcctttctt 81
>RF00027;let-7;AANU01121567.1/12811-12727 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 18 aggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaactatacaa 77
||||||| |||||| |||||| ||| |||||||||| ||||||||||||| |||| |
Sbjct: 9 aggtagtaggttgcctagtttgaggacagggattttatccacaaggaggtaattatatga 68
Query: 78 cctgctgcc 86
|||||||||
Sbjct: 69 cctgctgcc 77
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 taactatacaacctgctgcctttcttag 94
||||||||||||||||||||||||||||
Sbjct: 56 taactatacaacctgctgcctttcttag 83
>RF00027;let-7;ABGA01101244.1/3837-3924 9601:Pongo abelii
(Sumatran orangutan)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 aggtagtgggttgcatagttttagggcagggatttt 53
||||||| ||||||||||||| ||| ||||||||||
Sbjct: 9 aggtagtaggttgcatagtttgaggacagggatttt 44
