miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tcagagtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagagtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagat 60
Query: 61 aactatacaatctattgccttccctga 87
|||||||||||||||||||||||||||
Sbjct: 61 aactatacaatctattgccttccctga 87
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 117 bits (59), Expect = 2e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 2 cagagtgaggtagtagattgtatagttgt-agggtagttattttaccctgttcaggagat 60
||||||||||||||||||||||||||| | |||||||| |||||| ||| ||| ||||||
Sbjct: 2 cagagtgaggtagtagattgtatagtttttagggtagtaattttatccttttccggagat 61
Query: 61 aactatacaatctattgccttccctga 87
|||||||||||||||||||||||||||
Sbjct: 62 aactatacaatctattgccttccctga 88
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 105 bits (53), Expect = 9e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 7 tgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagataactat 66
|||||||||||||||||||||| | ||||||| ||||| ||||||| | ||||||||||
Sbjct: 7 tgaggtagtagattgtatagttttggggtagtgattttgccctgtttggaagataactat 66
Query: 67 acaatctattgccttccctga 87
|||||||||||||||||||||
Sbjct: 67 acaatctattgccttccctga 87
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 75.8 bits (38), Expect = 8e-14
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 2 cagagtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagata 61
|||||||||||||||| |||| ||||| |||||||| ||||| || ||||||||||
Sbjct: 2 cagagtgaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagata 61
Query: 62 actatacaatctattgccttccctga 87
||||||||| ||| ||||||||||||
Sbjct: 62 actatacaacctactgccttccctga 87
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 45 accctgttcaggagataactatacaatctattgccttcc 83
|||||||||||| |||||||||||| |||||||||||||
Sbjct: 45 accctgttcaggtgataactatacagtctattgccttcc 83
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 60.0 bits (30), Expect = 5e-09
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 6 gtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagataacta 65
|||||||||||| |||| | ||| |||||||| ||||| ||| ||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataacta 65
Query: 66 tacaatctattgccttcc 83
||||| ||| ||||||||
Sbjct: 66 tacaacctactgccttcc 83
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 51 ttcaggagataactatacaatctattgccttccctga 87
|||||| |||||||||||| |||||||||||||||||
Sbjct: 50 ttcaggtgataactatacagtctattgccttccctga 86
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 45 accctgttcaggagataactatacaatctattgccttcc 83
|||||||||||||||||||||||||| || ||||||||
Sbjct: 46 accctgttcaggagataactatacaacttactgccttcc 84
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 gataactatacaatctattgccttccctga 87
|||||||||||| |||||||||||||||||
Sbjct: 58 gataactatacagtctattgccttccctga 87
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 tgaggtagtagattgtatagttgtagggt 35
|||||||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggt 35
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 tgaggtagtagattgtatagttgtagggt 35
|||||||||||||||||||||| ||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggt 35
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 ttcaggagataactatacaatctattgccttcc 83
|||||| |||||||||||| |||||||||||||
Sbjct: 52 ttcaggtgataactatacagtctattgccttcc 84
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 51 ttcaggagataactatacaatctattgccttcc 83
|||||| |||||||||||| |||||||||||||
Sbjct: 52 ttcaggtgataactatacagtctattgccttcc 84
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 52 tcaggagataactatacaatctattgccttccctga 87
|||| |||||||||||||| ||| ||||||||||||
Sbjct: 51 tcagaagataactatacaacctactgccttccctga 86
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgaggtagtagattgtatagttgt 30
||||||||||||||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttgt 30
>RF00027;let-7;AAPY01663784.1/776-859 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 aggtagtagattgtatagttgtagggt 35
|||||||||||||||||||| ||||||
Sbjct: 9 aggtagtagattgtatagttctagggt 35
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 53 caggagataactatacaatctattgccttcc 83
|||| |||||||||||| |||||||||||||
Sbjct: 50 caggtgataactatacagtctattgccttcc 80
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 aggagataactatacaatctattgccttcc 83
|||||||||||||||||| || ||||||||
Sbjct: 58 aggagataactatacaatttactgccttcc 87
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 68/82 (82%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 6 gtgaggtagtagattgtatagttgtagggtagttattttaccctgttcaggagataacta 65
|||||||||||| |||| | ||| ||||||| ||||| ||| | |||| |||||||||
Sbjct: 6 gtgaggtagtaggttgtgtggtttcggggtagtgattttgccc-gatcagaagataacta 64
Query: 66 tacaatctattgccttccctga 87
||||| || ||||||||||||
Sbjct: 65 tacaacatactgccttccctga 86
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 gtgaggtagtagattgtatagttgtagggt 35
|||||||||||| |||||||||| ||||||
Sbjct: 6 gtgaggtagtaggttgtatagttttagggt 35
