miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02056441.1/23079-23166 9031:Gallus gallus
(chicken)
Length = 88
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aggctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagata 62
Query: 61 actgtacaggccactgccttgcc 83
|||||||||||||||||||||||
Sbjct: 63 actgtacaggccactgccttgcc 85
>RF00027;let-7;AAVX01039717.1/937-849 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 83.8 bits (42), Expect = 3e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 gaggtagtagtttgtacagtttgagggtctatgataccacccggtaca-ggagataactg 64
|||||||| ||||||||||||||||||| | ||| |||||||||| | |||||||||||
Sbjct: 8 gaggtagttgtttgtacagtttgagggtttgtgacaccacccggttgatggagataactg 67
Query: 65 tacaggccactgccttgc 82
|||| |||||||||||||
Sbjct: 68 tacaagccactgccttgc 85
>RF00027;let-7;BAAE01044355.1/4683-4770 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 4 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 63
|||||||||| ||||||||||||||||||||| |||| | |||| |||||||| |||||
Sbjct: 6 ctgaggtagttgtttgtacagtttgagggtctgtgattctgcccgatacaggagctaact 65
Query: 64 gtacaggccactgccttgcc 83
||||| | |||||||||||
Sbjct: 66 gtacaagtgactgccttgcc 85
>RF00027;let-7;AANH01007698.1/145537-145624 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 4 ctgaggtagtagtttgtacagtttgagggtct 35
|||||||||| |||||||||||||||||||||
Sbjct: 6 ctgaggtagttgtttgtacagtttgagggtct 37
