miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04035801.1/1686-1772 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 127 bits (64), Expect = 2e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggtcgggttgtgacattgcccgctgtggagata 60
|||||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||
Sbjct: 2 ctggctgaggtagtagtttgtgctgttggttgggttgagacactgcccgctatggagatg 61
Query: 61 actgcgcaagctactgccttgcta 84
||||||||||||||||||||||||
Sbjct: 62 actgcgcaagctactgccttgcta 85
>RF00027;let-7;CAAB01000076.1/26328-26242 31033:Takifugu rubripes
Length = 87
Score = 101 bits (51), Expect = 1e-21
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggtcgggttgtgacattgcccgctgtggagata 60
||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 2 ctggctgaggtagtattttgtgctgttggtcgggttgtcctattgccccttgtggagatg 61
Query: 61 actgcgcaagctactgccttgct 83
||||||||| |||||||||||||
Sbjct: 62 actgcgcaatctactgccttgct 84
>RF00027;let-7;AANH01007768.1/28424-28513 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 tgaggtagtagtttgtgctgttggtcgggttgtgacattg-cccgctgtggagataactg 64
||||||||||||||||||||||||||||||||| | |||| |||| | ||||||| ||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggttgtcatattgccccgttttggagatgactg 66
Query: 65 cgcaagctactgcctt 80
||||| ||||||||||
Sbjct: 67 cgcaatctactgcctt 82
>RF00027;let-7;BAAE01140557.1/855-941 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 69.9 bits (35), Expect = 5e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggtcgggt 35
|||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggctgaggtagtagtttgtgctgttggtcgggt 36
>RF00027;let-7;BAAF04117990.1/808-722 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 3 ggctgaggtagtagtttgtgctgttggtcgggt 35
|||||||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagtttgtgctgttggtcgggt 36
