miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 65
Query: 61 atacagtctattgccttccttaa 83
|||||||||||||||||||||||
Sbjct: 66 atacagtctattgccttccttaa 88
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggagggatttgatcccatttcaggtgataact 65
Query: 61 atacagtctattgccttccttaa 83
|||||||||||||||||||||||
Sbjct: 66 atacagtctattgccttccttaa 88
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 105 bits (53), Expect = 9e-23
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggaggga-tcaaaccctgttcaggtgataact 64
Query: 61 atacagtctattgccttcctt 81
|||||||||||||||||||||
Sbjct: 65 atacagtctattgccttcctt 85
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 85.7 bits (43), Expect = 8e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
|||||||||||||||||||||||||||||| |||| || ||| | | |||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggtgggactc-cacccttcttaggtgataact 64
Query: 61 atacagtctattgccttcc 79
|||||||||||||||||||
Sbjct: 65 atacagtctattgccttcc 83
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 79.8 bits (40), Expect = 5e-15
Identities = 71/81 (87%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttggtgggtgggat----tgcccgcccaggtgataact 61
Query: 61 atacagtctattgccttcctt 81
|||||||||||||||||||||
Sbjct: 62 atacagtctattgccttcctt 82
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/79 (89%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
||||||||||||||||||||||||| ||||| |||| ||| ||| ||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttg-tgggaaggatcacatcctatt-caggtgataact 63
Query: 61 atacagtctattgccttcc 79
|||||||||||||||||||
Sbjct: 64 atacagtctattgccttcc 82
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttggtgggagggattctgtcccatttcaggtgataact 60
||||||||||||||||||||||||| ||||| || || ||| | | ||| ||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttg-tgggatggcttggatcctact-cagatgataact 63
Query: 61 atacagtctattgccttcctt 81
|||||||||||| ||||||||
Sbjct: 64 atacagtctattaccttcctt 84
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttgg 26
||||||||||||||||||||||||||
Sbjct: 5 gtgaggtagtaggttgtatagtttgg 30
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttgg 26
||||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttgg 26
||||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttgg 26
||||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttgg 31
>RF00027;let-7;AADN02013953.1/13719-13633 9031:Gallus gallus
(chicken)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 47 ttcaggtgataactatacagtctattgccttcc 79
|||||| |||||||||||| |||||||||||||
Sbjct: 51 ttcaggagataactatacaatctattgccttcc 83
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttg 25
|||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtttg 30
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 48 tcaggtgataactatacagtctattgccttcctt 81
|||||||||||||| |||| ||||| ||||||||
Sbjct: 51 tcaggtgataactacacagcctattaccttcctt 84
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 5 gtgaggtagtaggttgtatagttt 28
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 5 gtgaggtagtaggttgtatagttt 28
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagttt 24
||||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagttt 28
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagttt 24
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagttt 29
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtt 23
|||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtt 23
|||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagtt 27
>RF00027;let-7;AAGJ02034255.1/6675-6598 7668:Strongylocentrotus
purpuratus
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagtttgg 26
||||||||||||||| ||||||||||
Sbjct: 6 gtgaggtagtaggttatatagtttgg 31
>RF00027;let-7;AAPN01191849.1/6200-6287 9258:Ornithorhynchus
anatinus (platypus)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gataactatacagtctattgccttcc 79
|||||||||||| |||||||||||||
Sbjct: 59 gataactatacaatctattgccttcc 84
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 gataactatacagtctattgccttcc 79
|||||||||||| |||||||||||||
Sbjct: 58 gataactatacaatctattgccttcc 83
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 tgaggtagtaggttgtatagtt 23
||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtt 28
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagt 22
||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagt 27
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gtgaggtagtaggttgtatagt 22
||||||||||||||||||||||
Sbjct: 6 gtgaggtagtaggttgtatagt 27
