miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtggagtcctatcctccctttgagctaactataca 60
||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtcacggcctccctgtgtgctaactataca 63
Query: 61 atctactgtctttcct 76
||||||||||||||||
Sbjct: 64 atctactgtctttcct 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 91.7 bits (46), Expect = 1e-18
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 gctgaggtagtagattgaatagttgtggagtcctat-cctccctttgagctaactataca 60
||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct: 5 gctgaggtagtagattgaatagttgtggagtataaaacctccctttgagataactataca 64
Query: 61 atctactgtctttc 74
||||||||||||||
Sbjct: 65 atctactgtctttc 78
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagtagattgaatagttgtggagtcct-atcctccctttgagctaactatacaat 62
|||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtttacatcctccttttgagataactatacaat 66
Query: 63 ctactgtctttcctaa 78
||||||||||||||||
Sbjct: 67 ctactgtctttcctaa 82
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 85.7 bits (43), Expect = 8e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtggagtccta-tcctccctttgagctaactatac 59
||||||||||||||||||||||||||||| || | |||||||| |||| |||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtttaagtcctccctctgagataactatac 63
Query: 60 aatctactgtctttcctaa 78
| |||||||||||||||||
Sbjct: 64 agtctactgtctttcctaa 82
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 83.8 bits (42), Expect = 3e-16
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtggagt--cctatcctccctttgagctaactata 58
||||||||||||||||||||||||||||| || ||| |||| |||||| ||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggttgtctaacctctttttgagataactata 63
Query: 59 caatctactgtctttcc 75
|||||||||||||||||
Sbjct: 64 caatctactgtctttcc 80
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 83.8 bits (42), Expect = 3e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagtagattgaatagttgtggagtcc-tatcctccctttgagctaactatacaat 62
|||||||||||||||||||||||||| || | | |||||| |||||| |||||||||| |
Sbjct: 7 tgaggtagtagattgaatagttgtggggttcatgtcctccttttgagataactatacagt 66
Query: 63 ctactgtctttcct 76
||||||||||||||
Sbjct: 67 ctactgtctttcct 80
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 81.8 bits (41), Expect = 1e-15
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtggagtcct--atcctccctttgagctaactata 58
||||||||||||||||||||||||||||||| ||| ||| || |||| ||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataactata 63
Query: 59 caatctactgtctttcctaa 78
||||||||||||||||||||
Sbjct: 64 caatctactgtctttcctaa 83
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 4 tgaggtagtagattgaatagttgtggagtcctatcctccctttgagctaactatacaatc 63
||||||||||||||| |||||| | | ||| || || ||| ||| |||||||||||||
Sbjct: 7 tgaggtagtagattgtatagttttagggtcatacccggtcttggagataactatacaatc 66
Query: 64 tactgtctttccta 77
||||||||||||||
Sbjct: 67 tactgtctttccta 80
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtgg 29
|||||||||||||||||||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtgg 32
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 taactatacaatctactgtctttcc 75
|||||||||||||||||||||||||
Sbjct: 57 taactatacaatctactgtctttcc 81
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 51 taactatacaatctactgtctttcctaa 78
||||||||||||||||||||||||||||
Sbjct: 56 taactatacaatctactgtctttcctaa 83
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 gctaactatacaatctactgtctttcct 76
||||||||||||||||||||||||||||
Sbjct: 49 gctaactatacaatctactgtctttcct 76
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 ggctgaggtagtagattgaatagttgtggagtcctatcctccctttgagctaactataca 60
|||||||||||||||||| ||||||||| || || | ||| |||| ||||||| ||
Sbjct: 4 ggctgaggtagtagattgtatagttgtgaggttgtacacctcctctgagataactatgca 63
Query: 61 atctactgtctttcct 76
||||||||||||||||
Sbjct: 64 atctactgtctttcct 79
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 taactatacaatctactgtctttcct 76
||||||||||||||||||||||||||
Sbjct: 52 taactatacaatctactgtctttcct 77
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 taactatacaatctactgtctttcct 76
||||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttcct 79
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 taactatacaatctactgtctttc 74
||||||||||||||||||||||||
Sbjct: 54 taactatacaatctactgtctttc 77
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 46 tgagctaactatacaatctactgtctttcc 75
|||| |||||||||| ||||||||||||||
Sbjct: 51 tgagataactatacagtctactgtctttcc 80
