miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tgagagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgagagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaag 63
Query: 61 tatgtatttca 71
|||||||||||
Sbjct: 64 tatgtatttca 74
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 105 bits (53), Expect = 7e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 66
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgta 69
Query: 67 tttca 71
|||||
Sbjct: 70 tttca 74
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 4 gagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtat 63
|||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct: 7 gagacatacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtat 66
Query: 64 gtat 67
||||
Sbjct: 67 gtat 70
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 6 gacatacttctttatatgcccatatgaac-ctggcaatctatggaatgtaaagaagtatg 64
||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 9 gacatacttctttatatgcccatatgaacacgagcaa-ctatggaatgtaaagaagtatg 67
Query: 65 tat 67
|||
Sbjct: 68 tat 70
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 4 gagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtat 63
|||||||||||||||||||||||||||| | || | | |||||||||||||||||||||
Sbjct: 7 gagacatacttctttatatgcccatatggagctcg-gagctatggaatgtaaagaagtat 65
Query: 64 gtat 67
||||
Sbjct: 66 gtat 69
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 66
|||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatacccatatgaacttaacag-ctatggaatgtaaagaagtatgta 68
Query: 67 ttt 69
|||
Sbjct: 69 ttt 71
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 63.9 bits (32), Expect = 2e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 66
|||||||||||||| | ||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 63.9 bits (32), Expect = 2e-10
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaat-ctatggaatgtaaagaagtatgt 65
|||||||||||||| | ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacata-caatgctatggaatgtaaagaagtatgt 68
Query: 66 attt 69
||||
Sbjct: 69 attt 72
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 61.9 bits (31), Expect = 9e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtatgta 66
|||||||||||||| | ||||||||||| | | ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagtatgta 69
Query: 67 ttt 69
|||
Sbjct: 70 ttt 72
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 61.9 bits (31), Expect = 9e-10
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 4 gagacatacttctttatatgcccatatgaacctggcaatctatggaatgtaaagaagtat 63
|||||||||||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 7 gagacatacttctttatacgcccatatggacttgctgcactatggaatgtaaagaagtat 66
Query: 64 gta 66
|||
Sbjct: 67 gta 69
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 58.0 bits (29), Expect = 1e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctggcaat-ctatggaatgtaaagaagtatgt 65
|||||||||||||| | ||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacata--aatgctatggaatgtaaagaagtatgt 67
Query: 66 attt 69
||||
Sbjct: 68 attt 71
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 tctatggaatgtaaagaagtatgtatt 68
|||||||||||||||||||||||||||
Sbjct: 48 tctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 54.0 bits (27), Expect = 2e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatgaacctg-gcaatctatggaatgtaaagaagtatgt 65
|||||||||||||| | |||||||||| | | || |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69
Query: 66 att 68
|||
Sbjct: 70 att 72
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 ctatggaatgtaaagaagtatgtattt 69
|||||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatgtattt 71
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgtattt 69
||||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtattt 72
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 43 ctatggaatgtaaagaagtatgtatt 68
||||||||||||||||||||||||||
Sbjct: 47 ctatggaatgtaaagaagtatgtatt 72
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgtat 67
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatgta 66
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccata 29
|||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccata 32
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 ctatggaatgtaaagaagtatg 64
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 ctatggaatgtaaagaagtatg 64
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatg 31
||||||||||| |||||||||||||
Sbjct: 11 acatacttcttcatatgcccatatg 35
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 acatacttctttatatgcccatatg 31
||||||||||| |||||||||||||
Sbjct: 10 acatacttcttcatatgcccatatg 34
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatg 88
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatg 65
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tatggaatgtaaagaagtatg 64
|||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatg 70
