miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 129 bits (65), Expect = 6e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 74 ttttt 78
|||||
Sbjct: 70 ttttt 74
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 6 ctcagagcacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaaga 65
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 ctcagagtacatacttctttatgtacccatatgaacatacaaggctatggaatgtaaaga 61
Query: 66 agtatgtatttt 77
||||||||||||
Sbjct: 62 agtatgtatttt 73
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 125 bits (63), Expect = 1e-28
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 ctcagagcacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaaga 65
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 ctcagagtacatacttctttatgtacccatatgaacata-aatgctatggaatgtaaaga 60
Query: 66 agtatgtatttttgg 80
|||||||||||||||
Sbjct: 61 agtatgtatttttgg 75
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 9 agagcacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagt 68
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 5 agagcacatacttctttatgtacccatatgaagatacaatgttatggaatgtaaagaagt 64
Query: 69 atgtatttttg 79
|||||||||||
Sbjct: 65 atgtatttttg 75
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 119 bits (60), Expect = 6e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 9 agagcacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagt 68
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 64
Query: 69 atgtatttttgg 80
||||| ||||||
Sbjct: 65 atgtacttttgg 76
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 63/68 (92%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 13 cacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgt 72
||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 cacatacttctttatatacccatatgaacttaaca-gctatggaatgtaaagaagtatgt 67
Query: 73 atttttgg 80
||||||||
Sbjct: 68 atttttgg 75
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 85.7 bits (43), Expect = 8e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatgaacata-caatgctatggaatgtaaagaagtatgt 72
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69
Query: 73 att 75
|||
Sbjct: 70 att 72
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 79.8 bits (40), Expect = 5e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 13 cacatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgt 72
||||||||||||||| | ||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 9 cacatacttctttatatgcccatatgaacctgctaagctatggaatgtaaagaagtatgt 68
Query: 73 attt 76
||||
Sbjct: 69 attt 72
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 79.8 bits (40), Expect = 5e-15
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatgaacatacaat-gctatggaatgtaaagaagtatgt 72
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatggacatatgataactatggaatgtaaagaagtatgt 69
Query: 73 atttttgg 80
||| ||||
Sbjct: 70 attcttgg 77
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 67.9 bits (34), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 catacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgtat 74
|||||||||| || | |||||||||| || | |||||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatgaa-atgctttgctatggaatgtaaagaagtatgtat 69
Query: 75 ttttgg 80
||||||
Sbjct: 70 ttttgg 75
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatg-aacatacaatgctatgga 56
||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 10 acatacttcgttatgtacccatatgaaacatacaatgctatgga 53
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatgaacata-caatgctatggaatgtaaagaagtatgt 72
|||||||||||||| | ||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctggcaat-ctatggaatgtaaagaagtatgt 68
Query: 73 attt 76
||||
Sbjct: 69 attt 72
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 14 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 73
|||||||||||||| |||||||| || | | | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttataatcccatatggacctgctaagctatggaatgtaaagaagtatgta 69
Query: 74 t 74
|
Sbjct: 70 t 70
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 ctatggaatgtaaagaagtatgtatt 75
||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 49 gctatggaatgtaaagaagtatgtat 74
||||||||||||||||||||||||||
Sbjct: 44 gctatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ctatggaatgtaaagaagtatgtat 74
|||||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 ctatggaatgtaaagaagtatgta 73
||||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgta 69
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 aatgctatggaatgtaaagaagtatgta 73
||||||||||||||| ||||||||||||
Sbjct: 42 aatgctatggaatgttaagaagtatgta 69
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgtat 74
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 tatggaatgtaaagaagtatgta 73
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ctatggaatgtaaagaagtatg 71
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ctatggaatgtaaagaagtatg 71
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
