miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatggagtcggccggcgttatggaatgttaagaagtatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 acatacttcttcatatgcccatatggagtcggccggcgttatggaatgttaagaagtatg 69
Query: 61 tatc 64
||||
Sbjct: 70 tatc 73
>RF00103;mir-1;AAWZ01040028.1/1478-1399 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 103 bits (52), Expect = 2e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatggagtcggccggcgttatggaatgttaagaagtatg 60
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 11 acatacttcttcatatgcccatatggagtcggccagatttatggaatgttaagaagtatg 70
Query: 61 tatc 64
||||
Sbjct: 71 tatc 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 52.0 bits (26), Expect = 8e-07
Identities = 55/64 (85%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatggagtcggccggcgttatggaatgttaagaagtatg 60
||||||||||| ||||||||||||||| | ||| | |||||||||| ||||||||||
Sbjct: 10 acatacttctttatatgcccatatgga---gctcggagctatggaatgtaaagaagtatg 66
Query: 61 tatc 64
||||
Sbjct: 67 tatc 70
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 catacttcttcatatgcccatatg 25
||||||||||||||||||||||||
Sbjct: 11 catacttcttcatatgcccatatg 34
>RF00103;mir-1;DQ066652.1/2-78 8364:Xenopus (Silurana) tropicalis
(western clawed frog)
Length = 77
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgta 62
|||||||||||||||||||||||
Sbjct: 47 tatggaatgttaagaagtatgta 69
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38 gttatggaatgttaagaagtatgtat 63
|||||||||||| |||||||||||||
Sbjct: 45 gttatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38 gttatggaatgttaagaagtatgta 62
|||||||||||| ||||||||||||
Sbjct: 50 gttatggaatgtaaagaagtatgta 74
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatg 25
||||||||||| |||||||||||||
Sbjct: 10 acatacttctttatatgcccatatg 34
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgtatc 64
|||||||||| ||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatc 71
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatg 25
||||||||||| |||||||||||||
Sbjct: 10 acatacttctttatatgcccatatg 34
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 acatacttcttcatatgcccatatg 25
||||||||||| |||||||||||||
Sbjct: 10 acatacttctttatatgcccatatg 34
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 tatggaatgttaagaagtatgtatc 64
|||||||||| ||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatc 71
