miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00053;mir-7;AADN02078255.1/8312-8401 9031:Gallus gallus
(chicken)
Length = 90
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctagttctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaa 60
Query: 69 caaatcacagtctaccatatggcacagact 98
||||||||||||||||||||||||||||||
Sbjct: 61 caaatcacagtctaccatatggcacagact 90
>RF00053;mir-7;AADN02064911.1/16831-16921 9031:Gallus gallus
(chicken)
Length = 91
Score = 145 bits (73), Expect = 1e-34
Identities = 86/89 (96%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 8 tggtctagttctgtgtggaagactagtgatttttgttgtttttagataactaaattgaca 67
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1 tggtctagttctgtgtggaagactagtgatttt-gttgtttttagataattaaattgaca 59
Query: 68 acaaatcacagtctaccatatggcacaga 96
|||||||||||||| ||||||||||||||
Sbjct: 60 acaaatcacagtctgccatatggcacaga 88
>RF00053;mir-7;ABQF01033208.1/2238-2148 59729:Taeniopygia guttata
Length = 91
Score = 139 bits (70), Expect = 8e-33
Identities = 83/86 (96%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 12 ctagttctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaacaa 71
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 5 ctagttctgtgtggaagactagtgatttt-gttgttttttgataactaaattgacaacaa 63
Query: 72 atcacagtctaccatatggcacagac 97
|||||||||| |||||||||||||||
Sbjct: 64 atcacagtctgccatatggcacagac 89
>RF00053;mir-7;CAAB01001823.1/35304-35392 31033:Takifugu rubripes
Length = 89
Score = 71.9 bits (36), Expect = 2e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 18 ctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaacaaatcaca 77
||||||||||||||||||||||| ||||||||||| || | || |||||||||||||||
Sbjct: 10 ctgtgtggaagactagtgatttt-gttgtttttagttagatcaactgacaacaaatcaca 68
Query: 78 gtct 81
||||
Sbjct: 69 gtct 72
>RF00053;mir-7;BAAE01231804.1/1152-1241 8090:Oryzias latipes
(Japanese medaka)
Length = 90
Score = 67.9 bits (34), Expect = 3e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 18 ctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaacaaatcaca 77
||||||||||||||||||| ||||||||||||||| || | || ||||||||||||||
Sbjct: 10 ctgtgtggaagactagtga-ttttgttgtttttagttagattaaccgacaacaaatcaca 68
Query: 78 gtctaccatatggcacag 95
|||| ||| | |||||||
Sbjct: 69 gtctgccaaacggcacag 86
>RF00053;mir-7;AAVX01096348.1/698-611 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 63.9 bits (32), Expect = 4e-10
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaa 68
||||| |||||||||||||||||||||| ||||||||||||| || | | || ||||||
Sbjct: 1 ggtctggttctgtgtggaagactagtga-ttttgttgttttt-gacagttgaa-tgacaa 57
Query: 69 caaatcacagtctaccatat 88
||||||||||||| ||||||
Sbjct: 58 caaatcacagtctgccatat 77
>RF00053;mir-7;AAWR02020437.1/482-565 9796:Equus caballus (horse)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 39/41 (95%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttttgttgtttt 49
|||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 1 ggtctagtgctgtgtggaagactagtga-ttttgttgtttt 40
>RF00053;mir-7;AY866137.1/489-573 9593:Gorilla gorilla (Western
Gorilla)
Length = 85
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttt 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 ggtctagtgctgtgtggaagactagtgatttt 32
>RF00053;mir-7;AANU01180350.1/1124-1208 9544:Macaca mulatta
(rhesus monkey)
Length = 85
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttt 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 ggtctagtgctgtgtggaagactagtgatttt 32
>RF00053;mir-7;ABRQ01582202.1/711-627 9813:Procavia capensis (cape
rock hyrax)
Length = 85
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 ggtctagttctgtgtggaagactagtgatttt 40
|||||||| |||||||||||||||||||||||
Sbjct: 1 ggtctagtgctgtgtggaagactagtgatttt 32
>RF00053;mir-7;CU468920.7/50067-49977 7955:Danio rerio (zebrafish)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 ttctgtgtggaagactagtgatttttgttgtttttagataactaaattgacaacaaatca 75
|||||||||||||||| |||| |||||||||| |||| || | || |||||||||||||
Sbjct: 9 ttctgtgtggaagacttgtga-ttttgttgttgttagttagatgaagtgacaacaaatca 67
Query: 76 cagtct 81
| ||||
Sbjct: 68 cggtct 73
>RF00053;mir-7;AAGV020451722.1/1358-1272 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 tggtctagttctgtgtggaagactagtgatttt 40
||||||||| || ||||||||||||||||||||
Sbjct: 1 tggtctagtgctatgtggaagactagtgatttt 33
>RF00053;mir-7;AAGW01390325.1/1387-1301 9986:Oryctolagus cuniculus
(rabbit)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 tggtctagttctgtgtggaagactagtgatttt 40
|||||| || |||||||||||||||||||||||
Sbjct: 1 tggtctggtgctgtgtggaagactagtgatttt 33
>RF00053;mir-7;AADN02062018.1/14238-14149 9031:Gallus gallus
(chicken)
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 8 tggtctagttctgtgtggaagactagtgatttt 40
|||||| | ||||||||||||||||||||||||
Sbjct: 1 tggtctggctctgtgtggaagactagtgatttt 33
>RF00053;mir-7;ABQF01047217.1/12512-12598 59729:Taeniopygia
guttata
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tctgtgtggaagactagtgatttt 40
||||||||||||||||||||||||
Sbjct: 9 tctgtgtggaagactagtgatttt 32
>RF00053;mir-7;AAKN02057383.1/83234-83150 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ctgtgtggaagactagtgatttt 40
|||||||||||||||||||||||
Sbjct: 10 ctgtgtggaagactagtgatttt 32
>RF00053;mir-7;CR933818.11/120065-120156 7955:Danio rerio
(zebrafish)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 20 gtgtggaagactagtgatttttgttgttttt 50
||||||||||||||||| |||||||||||||
Sbjct: 12 gtgtggaagactagtga-ttttgttgttttt 41
>RF00053;mir-7;AAVX01240858.1/475-388 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 15 gttctgtgtggaagactagtgatttttgttgtttt 49
|||||| ||||||||||||||| ||||||||||||
Sbjct: 7 gttctgcgtggaagactagtga-ttttgttgtttt 40
>RF00053;mir-7;ABEP02016699.1/38749-38660 7739:Branchiostoma
floridae (Florida lancelet)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 gttctgtgtggaagactagtgatttt 40
||||||| ||||||||||||||||||
Sbjct: 7 gttctgtatggaagactagtgatttt 32
>RF00053;mir-7;AAJJ01000341.1/22410-22324 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tgtgtggaagactagtgatttt 40
||||||||||||||||||||||
Sbjct: 11 tgtgtggaagactagtgatttt 32
