miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 109 bits (55), Expect = 6e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtatgtgatatcataaagctagagaaccgaatgt 74
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtatgtgatgtcataaagctagagaaccgaatgt 60
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 85.7 bits (43), Expect = 9e-17
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtatgtgatatcataaagctagagaaccgaatgt 74
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagttggtgtaatatcataaagctagagaaccgaatgt 60
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 81.8 bits (41), Expect = 1e-15
Identities = 54/57 (94%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatgagtgtatgtgatatcataaagctagagaaccgaa 71
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ctctttggttatctagctgtatgagt-tatgaaatatcataaagctagagaaccgaa 56
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatgagtgtat 44
||||||||||||||||||||||||||||||
Sbjct: 1 ctctttggttatctagctgtatgagtgtat 30
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgta 43
||||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgta 29
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatgagtgt 42
||||||||||||||||||||||||||||
Sbjct: 1 ctctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;AAFR03052350.1/15878-15820 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 59
Score = 54.0 bits (27), Expect = 3e-07
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtatgtgatatcataaagctagagaaccgaatgt 74
||||||||| |||||||| ||||||| | ||| ||||||||||| |||||||||||||
Sbjct: 2 tctttggtttcctagctgtgtgagtgtctctga-atcataaagctggagaaccgaatgt 59
>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 21 ggttatctagctgtatgagtgtatgtgatatcataaagctagagaaccgaa 71
|||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct: 7 ggttatctagctgtatgagtgtattttccttcataaagctagataaccgaa 57
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
(cape rock hyrax)
Length = 62
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatgagtg 41
|||||||||||||||||||||||||||
Sbjct: 1 ctctttggttatctagctgtatgagtg 27
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgt 42
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgt 42
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
(ghost shark)
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 55/63 (87%), Gaps = 5/63 (7%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatgagtgtatgtgata---tcataaagctagagaaccgaa 71
|||||||||| |||||||||||||||| ||| ||| ||||||||||||| |||||||
Sbjct: 1 ctctttggttttctagctgtatgagtg--tgttataccttcataaagctagacaaccgaa 58
Query: 72 tgt 74
|||
Sbjct: 59 tgt 61
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagt 40
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagt 40
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ctttggttatctagctgtatgagt 40
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ctctttggttatctagctgtatga 38
||||||||||||||||||||||||
Sbjct: 1 ctctttggttatctagctgtatga 24
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgag 39
||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgag 25
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tttggttatctagctgtatgagtg 41
||||||||||||||||||||||||
Sbjct: 4 tttggttatctagctgtatgagtg 27
>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
corporis (human body louse)
Length = 60
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatg 37
||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatg 23