miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
(chicken)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 5 gccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcat 60
Query: 65 tatttgctgctttagaaatttaagga 90
||||||||||||||||||||||||||
Sbjct: 61 tatttgctgctttagaaatttaagga 86
>RF00455;mir-15;AAPN01094471.1/3183-3268 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgcttta 78
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgcatggtatagccaagatgcgaatcattatttgctgcttta 74
Query: 79 gaaatttaagga 90
||||||||||||
Sbjct: 75 gaaatttaagga 86
>RF00455;mir-15;AAYZ01325292.1/263-348 9978:Ochotona princeps
(American pika)
Length = 86
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 5 gccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcat 64
||||||||||||| ||||||||||||||||||| ||| | |||| || |||||||||||
Sbjct: 1 gccttaaagtactgtagcagcacatcatggtttacataatatagtcaatatgcgaatcat 60
Query: 65 tatttgctgctttagaaatttaagga 90
|||||||||| ||||||||||||||
Sbjct: 61 aatttgctgctctagaaatttaagga 86
>RF00455;mir-15;AAWZ01001750.1/5603-5688 28377:Anolis carolinensis
(green anole)
Length = 86
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 8 ttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattat 67
|||||||||||||||||||||||||| |||| ||| |||| || |||| | |||||||
Sbjct: 4 ttaaagtactctagcagcacatcatgatttgtatgtcatagtaaatatgcaagtcattat 63
Query: 68 ttgctgctttagaaatttaa 87
|||||||||||||| |||||
Sbjct: 64 ttgctgctttagaattttaa 83
>RF00455;mir-15;AAFR03046999.1/49599-49513 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 87
Score = 69.9 bits (35), Expect = 5e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 55 tgcgaatcattatttgctgctttagaaatttaagg 89
|||||||||||||||||||||||||||||||||||
Sbjct: 52 tgcgaatcattatttgctgctttagaaatttaagg 86
>RF00455;mir-15;AANH01002998.1/16865-16950 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 55 tgcgaatcattatttgctgctttagaaatttaagga 90
|||||| |||||||||||||||||||| ||||||||
Sbjct: 51 tgcgaaccattatttgctgctttagaattttaagga 86
>RF00455;mir-15;BAAF04019869.1/1029-1115 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 55 tgcgaatcattatttgctgctttagaaatttaagga 90
|||||| |||||||||||||||||||| ||||||||
Sbjct: 52 tgcgaaccattatttgctgctttagaattttaagga 87
>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
guttata
Length = 86
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 19 tagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcattatttgctgcttta 78
|||||||||||||||||||||||||| | | | | ||| |||||| |||||||||| ||
Sbjct: 15 tagcagcacatcatggtttgcatgctctgctcagggtgcaaatcatgatttgctgctgta 74
Query: 79 gaaatttaagg 89
| |||| ||||
Sbjct: 75 ggaattgaagg 85
>RF00455;mir-15;CAAB01004507.1/1293-1381 31033:Takifugu rubripes
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 actctagcagcacatcatggtttgca 40
||||||||||||||||||| ||||||
Sbjct: 11 actctagcagcacatcatgttttgca 36
>RF00455;mir-15;AANH01009782.1/137680-137769 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 actctagcagcacatcatggtttgca 40
||||||||||||||||||| ||||||
Sbjct: 11 actctagcagcacatcatgttttgca 36
>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
(ghost shark)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tagcagcacatcatggtttgca 40
||||||||||||||||||||||
Sbjct: 15 tagcagcacatcatggtttgca 36
