miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 5 gtcatactctagcagcacgtaaatattggtgttaaaactgtaaatatctccagtattaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcatactctagcagcacgtaaatattggtgttaaaactgtaaatatctccagtattaac 60
Query: 65 tgtgctgctgaagtaaggc 83
|||||||||||||||||||
Sbjct: 61 tgtgctgctgaagtaaggc 79
>RF00254;mir-16;ABRQ01105896.1/793-873 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaa--tatctccagtattaactgtgctg 71
|||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggagttaagattctaaaattatctccagtattaactgtgctg 69
Query: 72 ctgaagtaagg 82
|||||||||||
Sbjct: 70 ctgaagtaagg 80
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 75.8 bits (38), Expect = 8e-14
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaaaactgtaaat-atctccagtattaactgtgctgc 72
||||||||||||||||||||||||||| | ||| | |||||||||||| ||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgttaaat-tctaagttatctccagtattgactgtgctgc 68
Query: 73 tgaagtaagg 82
||||||||||
Sbjct: 69 tgaagtaagg 78
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattggtgt 32
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 actctagcagcacgtaaatattgg 33
||||||||||||||||||||||||
Sbjct: 6 actctagcagcacgtaaatattgg 29
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ctagcagcacgtaaatattggtgt 36
||||||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggtgt 32
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ctctagcagcacgtaaatattgg 33
|||||||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaatattgg 29
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgt 36
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;ABPK01051643.1/651-732 57307:Labeotropheus
fuelleborni
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactctagcagcacgtaaatattggtgttaa 39
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactgtagcagcacgtaaatattggagttaa 35
>RF00254;mir-16;AANH01005347.1/82242-82163 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactctagcagcacgtaaatattggtgttaa 39
|||| |||||||||||||||||||| |||||
Sbjct: 5 tactgtagcagcacgtaaatattggagttaa 35
>RF00254;mir-16;CAAB01000586.1/28233-28314 31033:Takifugu rubripes
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 tagcagcacgtaaatattggtgttaa 39
|||||||||||||||||||| |||||
Sbjct: 10 tagcagcacgtaaatattggagttaa 35
>RF00254;mir-16;AAVX01576107.1/322-406 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 tctagcagcacgtaaatattgg 33
||||||||||||||||||||||
Sbjct: 8 tctagcagcacgtaaatattgg 29
