miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AADN02021066.1/63731-63651 9031:Gallus gallus
(chicken)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 8 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 60
Query: 68 attgtgctgcttaagcgtggc 88
|||||||||||||||||||||
Sbjct: 61 attgtgctgcttaagcgtggc 81
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 105 bits (53), Expect = 1e-22
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 67
||||||||||||||||||||||||||||| || || ||| ||||||| ||||||||||||
Sbjct: 1 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 59
Query: 68 attgtgctgcttaagcgtggc 88
|||||||||||| ||||||||
Sbjct: 60 attgtgctgcttcagcgtggc 80
>RF00254;mir-16;ABRQ01058087.1/3558-3638 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 95.6 bits (48), Expect = 1e-19
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattattgtgct 68
Query: 76 gctt 79
||||
Sbjct: 69 gctt 72
>RF00254;mir-16;AAPN01094471.1/3343-3419 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 83.8 bits (42), Expect = 4e-16
Identities = 64/71 (90%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggtgtagtgaagt----cttaaaccccaatattattgtgct 64
Query: 76 gcttaagcgtg 86
|||| ||||||
Sbjct: 65 gctttagcgtg 75
>RF00254;mir-16;ABQO011210750.1/1431-1352 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 56 aaccccaatattattgtgctgcttaagcgtggc 88
|||||||||||||||||||||||| ||||||||
Sbjct: 48 aaccccaatattattgtgctgcttcagcgtggc 80
>RF00254;mir-16;AADN02005381.1/19775-19853 9031:Gallus gallus
(chicken)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgt 39
||||||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatattggtgt 32
>RF00254;mir-16;AANN01638158.1/2837-2759 9365:Erinaceus europaeus
(western European hedgehog)
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CR478286.10/109802-109722 7955:Danio rerio
(zebrafish)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
>RF00254;mir-16;CAAB01000783.1/48863-48783 31033:Takifugu rubripes
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattggtgt 32
