miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00254;mir-16;AADN02013299.1/17205-17125 9031:Gallus gallus
(chicken)
Length = 81
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaatactggagtgggggatcgcctgttgctctccagtattgcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gctctagcagcacgtaaatactggagtgggggatcgcctgttgctctccagtattgcatt 65
Query: 61 gctgctttagt 71
|||||||||||
Sbjct: 66 gctgctttagt 76
>RF00254;mir-16;AAPN01018576.1/2935-3016 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 75.8 bits (38), Expect = 6e-14
Identities = 62/66 (93%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 4 ctagcagcacgtaaatactggagtg-ggggatcgcct-gttgctctccagtattgcattg 61
|||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct: 9 ctagcagcacgtaaatactggagtttggggat-gcctcgttgctctccagtattgcattg 67
Query: 62 ctgctt 67
||||||
Sbjct: 68 ctgctt 73
>RF00254;mir-16;AAWZ01041379.1/6076-6157 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaatactggagt 27
|||||||||||||||||||||||||||
Sbjct: 6 gctctagcagcacgtaaatactggagt 32
>RF00254;mir-16;AAVX01142701.1/173-96 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagt 27
|||||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatactggagt 32
>RF00254;mir-16;ABQF01022934.1/40019-40098 59729:Taeniopygia
guttata
Length = 80
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ctagcagcacgtaaatactggagtg 28
||||||||||||||||| |||||||
Sbjct: 9 ctagcagcacgtaaatattggagtg 33
