miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 165 bits (83), Expect = 1e-40
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 2 tcagagtaatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagagtaatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtga 60
Query: 62 aggcacttgtagcattatgttga 84
|||||||||||||||||||||||
Sbjct: 61 aggcacttgtagcattatgttga 83
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 75.8 bits (38), Expect = 8e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 8 taatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcac 67
||||||||||||||||||||||||||||||| | | | | | ||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtggtgtgt-gcatctactgcagtgaaggcac 65
Query: 68 ttgtagcatt 77
|||| |||||
Sbjct: 66 ttgtggcatt 75
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 73.8 bits (37), Expect = 3e-13
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 8 taatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcac 67
||||||||||||||||||||||||||||||| | | || || ||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtg-tct-taaaatctactgcagtgaaggcac 64
Query: 68 ttgtagcattatgttga 84
|| |||||||| ||||
Sbjct: 65 ttcaagcattatattga 81
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 63.9 bits (32), Expect = 3e-10
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 69
||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt--tttatcaaatctactgcagtgaaggcactt 66
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 69
||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtactatgcaatacctactgcagtggaggcactt 68
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 69
||||||||||||||||||||||||||| | || | || ||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagttttcta-aaaatctactgcagtgaaggcactt 67
>RF00051;mir-17;AAPN01282049.1/1442-1526 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 66/77 (85%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 3 cagagtaatgtcaaagtgcttacagtgcagg--tagtgatatatagaacctactgcagtg 60
|||| |||||||||||| ||| |||||||| ||||| || ||||| || ||||||||
Sbjct: 2 cagaataatgtcaaagtatttaaagtgcaggggtagtggcatgtagaatctgctgcagtg 61
Query: 61 aaggcacttgtagcatt 77
|||||||||||||||||
Sbjct: 62 aaggcacttgtagcatt 78
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcacttg 70
||||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggcacttc 69
Query: 71 tagca 75
|||||
Sbjct: 70 tagca 74
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 69
||||||||||||||||||||||||||| | ||| || ||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt--tcaatataatctactgcagtggaggcactt 66
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 agtaatgtcaaagtgcttacagtgcaggtagt 37
|||| |||||||||||||||||||||||||||
Sbjct: 5 agtagtgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatataga-acctactgcagtgaaggcactt 69
||||||||||||||||||||||||||| | || || | ||||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt-acatttaaatacctactgcagtggaggcactt 68
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtgat 40
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtgat 40
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtga 39
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtga 38
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atgtcaaagtgcttacagtgcaggtagt 37
|||| |||||||||||||||||||||||
Sbjct: 9 atgtaaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
