miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 220 bits (111), Expect = 4e-57
Identities = 129/135 (95%)
Strand = Plus / Plus
Query: 3 tcaccgtcttgctcggattcgcttggtgcaggtcgagaactaattgtctaacacatccac 62
||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct: 1 tcaccgtcttgctcggattcgcttggtgcaggtcgggaaccaattgtctgacacatccac 60
Query: 63 gaagttttacttgctggtttgtgagcagggattggatcccgccttgcatcaattgaatcg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 gaagttttacttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcg 120
Query: 123 gagccctgatcgtga 137
||| |||||| ||||
Sbjct: 121 gagtcctgatggtga 135
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 125 bits (63), Expect = 2e-28
Identities = 113/127 (88%), Gaps = 2/127 (1%)
Strand = Plus / Plus
Query: 3 tcaccgtcttgctcggattcgcttggtgcaggtcgagaactaattgtctaacacatccac 62
|||||||| ||||||||||||||||||||||||| ||||||||| || |||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccac 60
Query: 63 ga-agttttactt-gctggtttgtgagcagggattggatcccgccttgcatcaattgaat 120
| |||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 gtgagttttcctttgttggtttgtgagcagggattggatcccgccttgcatcaactgaat 120
Query: 121 cggagcc 127
|||||||
Sbjct: 121 cggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 105 bits (53), Expect = 2e-22
Identities = 113/129 (87%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 3 tcaccgtcttgctcggattcgcttggtgcaggtcgagaactaattgtctaacacatccac 62
|||||||| ||||||||||||||||||||||||| |||| || || || ||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccac 60
Query: 63 ga-agttttac-ttgctggtttgtgagc-agggattggatcccgccttgcatcaattgaa 119
| | || ||| ||| |||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 61 gtgacttgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactgaa 120
Query: 120 tcggagccc 128
|||||||||
Sbjct: 121 tcggagccc 129
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 89.7 bits (45), Expect = 9e-18
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 77 tggtttgtgagcagggattggatcccgccttgcatcaattgaatcggagccctgatcgtg 136
|||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct: 77 tggtttgtgagcagtgattggatcccgccttgcatcaactgaatcggagccccgatggtg 136
Query: 137 a 137
|
Sbjct: 137 a 137
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 87.7 bits (44), Expect = 4e-17
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 77 tggtttgtgagcagggattggatcccgccttgcatcaattgaatcgga 124
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 81 tggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 128
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 81.8 bits (41), Expect = 2e-15
Identities = 107/125 (85%), Gaps = 3/125 (2%)
Strand = Plus / Plus
Query: 3 tcaccgtcttgctcggattcgcttggtgcaggtcgagaactaattgtctaacacatccac 62
|||||||| ||||||||||||||||||||||||| || ||||| || ||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaatccgctgacacagccac 59
Query: 63 gaag-ttttacttgctggtttgtgagcagggattggatcccgccttgcatcaattgaatc 121
| |||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct: 60 gtgtcttttacttattggtt-gtgagcagggattggctcccgccttgcatcaactgaatc 118
Query: 122 ggagc 126
|||||
Sbjct: 119 ggagc 123
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 73.8 bits (37), Expect = 5e-13
Identities = 94/112 (83%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 15 tcggattcgcttggtgcaggtcgagaactaattgtctaacacatccac--gaagttttac 72
||||||||||||||||||||||| |||||||||| || ||||| |||| || | | |
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaattggctgacacagccacgtgacttaatcc 72
Query: 73 ttgctggtttgtgagcagggattggatcccgccttgcatcaattgaatcgga 124
| ||| |||||| |||| |||||||||||||||||||||| |||||||||
Sbjct: 73 tcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 91 ggattggatcccgccttgcatcaattgaatcggagccct 129
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactgaatcggagccct 127
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 13 gctcggattcgcttggtgcaggtcgagaactaatt 47
||||||||||||||||||||||||| |||| ||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaaccaatt 45
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 97/117 (82%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 13 gctcggattcgcttggtgcaggtcgagaactaattgtctaacacatccacgaagttttac 72
||||||||||||||||||||||||| ||||| |||| || ||||| ||||| | || |
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaactgattggctgacacagccacgtggattccc 70
Query: 73 -ttgctggtttgtgagcagggattggatcccgccttgcatcaattgaatcggagccc 128
| ||| ||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 71 atcattggcatgtgagcagggatctgctcccgccttgcatcaactgaatcggagccc 127
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcggag 125
|||||||||||||||||||||| ||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 3 tcaccgtcttgctcggattcgcttggtgcaggtcgagaact 43
|||||||| ||||||||||||||||||||||||| |||||
Sbjct: 1 tcaccgtcgagctcggattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcggag 125
|||||||||||||||||||||| ||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 gattcgcttggtgcaggtcgagaact 43
|||||||||||||||||||| |||||
Sbjct: 16 gattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcggag 125
|||||||||||||||||||||| ||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcggag 125
|||||||||||||||||||||| ||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 81 ttgtgagcagggattggatcccgccttgcatcaattgaatcggagccc 128
|||||||||||||| |||||| ||||| |||||| |||||| ||||||
Sbjct: 26 ttgtgagcagggatcggatcctgccttccatcaactgaatccgagccc 73
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 ctcggattcgcttggtgcaggtcgagaactaattg 48
|||||||||||||||||||||||| ||||| ||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattg 46
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 96 ggatcccgccttgcatcaattgaatcggag 125
||||||||||||||||||| ||||||||||
Sbjct: 95 ggatcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 14 ctcggattcgcttggtgcaggtcgagaactaattg 48
|||||||||||||||||||||||| ||||| ||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattg 46
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 tcggattcgcttggtgcaggtcgagaactaattg 48
||||||||||||||||||||||| ||||| ||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactgattg 46
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcg 122
|||||||||||||||||||||| |||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 19 attcgcttggtgcaggtcgagaactaattg 48
||||||||||||||||||| ||||| ||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattg 46
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaattgaatcggag 125
||||||||| ||||||||||||| |||||||||
Sbjct: 68 attggatcctgccttgcatcaatcgaatcggag 100
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 97 gatcccgccttgcatcaattgaatcggag 125
|||||||||||||||||| ||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 18 gattcgcttggtgcaggtcgagaactaattgtctaa 53
|||||||||||||||||||| ||||| |||| ||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctaa 51
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 97 gatcccgccttgcatcaattgaatcggagccc 128
|||||||||||||||||| |||||| ||||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgagccc 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 gattcgcttggtgcaggtcgagaact 43
|||||||||||||||||||| |||||
Sbjct: 16 gattcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 96 ggatcccgccttgcatcaattgaatcggagcc 127
||||||||||||||| ||| ||||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggagcc 92
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 96 ggatcccgccttgcatcaattgaatcggagcc 127
||||||||||||||| ||| ||||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggagcc 94
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 18 gattcgcttggtgcaggtcgagaactaattg 48
|||||||||||||||||||| ||||| ||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattg 46
