miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
(chicken)
Length = 72
Score = 143 bits (72), Expect = 4e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 7 ttctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaa 60
Query: 67 actgatggtggc 78
||||||||||||
Sbjct: 61 actgatggtggc 72
>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 87.7 bits (44), Expect = 2e-17
Identities = 67/72 (93%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 8 tctgttagttttgcatagttgcactacaggaaga-atgtagttgtgcaaatctatgcaaa 66
|||| ||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||
Sbjct: 2 tctgctagttttgcatagttgcactacaagaatagatg-agttgtgcaaatctatgcaaa 60
Query: 67 actgatggtggc 78
||||||||||||
Sbjct: 61 actgatggtggc 72
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 11 gttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaactg 70
||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||
Sbjct: 5 gttagttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactg 64
Query: 71 atggtggc 78
| ||||||
Sbjct: 65 acggtggc 72
>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
(Japanese medaka)
Length = 72
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 8 tctgttagttttgcatagttgcactacaggaaga-atgtagttgtgcaaatctatgcaaa 66
||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||
Sbjct: 2 tctgttagttttgcatagttgcactgcaagaagagatg-cgttgtgcaaatctatgcaaa 60
Query: 67 actgatggtggc 78
||||| |||||
Sbjct: 61 gctgatagtggc 72
>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 69.9 bits (35), Expect = 5e-12
Identities = 48/51 (94%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 21 catagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaactga 71
|||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 15 cataattgcactacaagaagaatgtagt-gtgcaaatctatgcaaaactga 64
>RF00245;mir-19;AAPN01215107.1/7965-8033 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 53/61 (86%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 12 ttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaactga 71
||||||| |||||||||||| | |||||||||||||| | |||||||| |||||||||
Sbjct: 6 ttagtttagcatagttgcacaa---gaagaatgtagttgcgtaaatctatacaaaactga 62
Query: 72 t 72
|
Sbjct: 63 t 63
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 gttgtgcaaatctatgcaaaactga 71
|||||||||||||||||||||||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 49 tgtgcaaatctatgcaaaactgatggtggc 78
|||||||||| ||||||||||||| |||||
Sbjct: 47 tgtgcaaatccatgcaaaactgattgtggc 76
