miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 149 bits (75), Expect = 7e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 9 tctggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgc 60
Query: 69 aaaactgactgtggc 83
|||||||||||||||
Sbjct: 61 aaaactgactgtggc 75
>RF00245;mir-19;ABRR01417027.1/645-719 30538:Lama pacos (alpaca)
Length = 75
Score = 93.7 bits (47), Expect = 3e-19
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 12 ggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaa 71
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 4 ggttagttttgcaggtttgtctccagctgtgtgatattctgctgtgcaaatccaggcaac 63
Query: 72 actgactgtgg 82
|||||||||||
Sbjct: 64 actgactgtgg 74
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 77.8 bits (39), Expect = 2e-14
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 28 ttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaactgactgtgg 82
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 18 ttgcatccagctgtgtgat-ctctgctgtgcaaatccatgcaaaactgaatgtgg 71
>RF00245;mir-19;AAPN01215107.1/8247-8320 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 tagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaact 74
|||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||||
Sbjct: 7 tagttttgcaggttggcatccagctgtatggtactctgccaagcaaat-catgcaaaact 65
Query: 75 gactg 79
|||||
Sbjct: 66 gactg 70
>RF00245;mir-19;AAPN01121175.1/4459-4405 9258:Ornithorhynchus
anatinus (platypus)
Length = 55
Score = 67.9 bits (34), Expect = 2e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 19 tttgcaggtttgcatccagctgtatgatactctgctgtgcaaatcc 64
||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 1 tttgcaggtttgcatccagctgtgtggtattctgctgtgcaaatcc 46
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactgactgtgg 82
||||||||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactgactgtgg 73
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgactgtg 78
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaa 70
|||| |||||||| ||||||||| ||||| | | | || ||||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcattcagctttgt--tgctgtgctgtgcaaatccatgcaa 60
Query: 71 aactgact 78
||||||||
Sbjct: 61 aactgact 68
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtggc 83
||||||||||||||||||||||||| ||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtggc 76
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaa 70
|||| |||||||| ||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcatccagctttgt--taccgcgctgtgcaaatccatgcaa 60
Query: 71 aactgac 77
|||||||
Sbjct: 61 aactgac 67
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 9 tctggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgc 68
||||||||||||||| ||||||| | ||||| | || |||||||||||||||||||
Sbjct: 1 tctggttagttttgctggtttgctttcagcttttcaatctactgctgtgcaaatccatgc 60
Query: 69 aaaactga 76
||||||||
Sbjct: 61 aaaactga 68
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtgg 82
||||||||||||||||||||||||| |||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtgg 79
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 agttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaact 74
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 8 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtatg-atactctgctgtgcaaatccatgca 69
|||| |||||||| ||||||||||||||| || || | |||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcatccagctttaactattgtttgctgtgcaaatccatgca 62
Query: 70 aaactga 76
|||||||
Sbjct: 63 aaactga 69
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactgac 77
|||||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactgac 70
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 tgtgcaaatccatgcaaaactgactgtggc 83
|||||||||| |||||||||||||||||||
Sbjct: 34 tgtgcaaatctatgcaaaactgactgtggc 63
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccag 37
||||||||||| |||||||||||||||
Sbjct: 3 tggttagttttacaggtttgcatccag 29
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactga 76
||||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 46 gctgtgcaaatccatgcaaaactgattgtg 75
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgac 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ggttagttttgcaggtttgcat 33
||||||||||||||||||||||
Sbjct: 4 ggttagttttgcaggtttgcat 25
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 48 gctgtgcaaatccatgcaaaactgattgtg 77
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 51 gctgtgcaaatccatgcaaaactgattgtg 80
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgac 68
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 47 gctgtgcaaatccatgcaaaactgattgtg 76
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactga 76
||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;AANH01005996.1/21250-21325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctctgctgtgcaaatccatgcaaa 71
||||||||||||||||||||||||
Sbjct: 41 ctctgctgtgcaaatccatgcaaa 64
>RF00245;mir-19;BAAE01249018.1/744-824 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtggc 83
|||||||||| |||||||||||||||| ||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgactatggc 81
>RF00245;mir-19;AAVX01075480.1/1651-1574 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 ctgtgcaaatccatgcaaaactgactg 79
||||||||||||| |||||||||||||
Sbjct: 48 ctgtgcaaatccacgcaaaactgactg 74
>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 54 tgtgcaaatccatgcaaaactgactgtggc 83
|||||||||| ||||||||||||| |||||
Sbjct: 43 tgtgcaaatctatgcaaaactgacggtggc 72
>RF00245;mir-19;ABPK01045950.1/308-388 57307:Labeotropheus
fuelleborni
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
|||||||||| |||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgac 75
