miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AADN02013295.1/150-68 9031:Gallus gallus (chicken)
Length = 83
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ctagcagtatcaaagtgctcatagtgcaggtagcttggcattggacctactgtaatgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ctagcagtatcaaagtgctcatagtgcaggtagcttggcattggacctactgtaatgtgg 62
Query: 61 gcacttacagtactgttagat 81
|||||||||||||||||||||
Sbjct: 63 gcacttacagtactgttagat 83
>RF00051;mir-17;AY866359.1/938-1020 9593:Gorilla gorilla (Western
Gorilla)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 67/76 (88%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 1 ctagcagtatcaaagtgctcatagtgcaggtag-cttggcattggac-ctactgtaatgt 58
|||| |||| ||||||||||||||||||||||| ||||||| ||| |||||||||| |
Sbjct: 3 ctagtagtaccaaagtgctcatagtgcaggtagttttggcat--gactctactgtaatat 60
Query: 59 gggcacttacagtact 74
|||||||| |||||||
Sbjct: 61 gggcacttccagtact 76
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtactg 75
|||||||||||||||||||||||||||||
Sbjct: 51 ctactgtaatgtgggcacttacagtactg 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 gcagtatcaaagtgctcatagtgcaggtag 33
||||| ||||||||||||||||||||||||
Sbjct: 6 gcagtgtcaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AAPN01018584.1/1896-1981 9258:Ornithorhynchus
anatinus (platypus)
Length = 86
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 ctactgtaatgtgggcacttacagtact 74
||||||||||||||||||||||||||||
Sbjct: 52 ctactgtaatgtgggcacttacagtact 79
>RF00051;mir-17;ABRQ01318667.1/1268-1186 9813:Procavia capensis
(cape rock hyrax)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 ctagcagtatcaaagtgctcatagtgcaggtagcttgg 38
|||| |||| ||||||||||||||||||||||| ||||
Sbjct: 3 ctagtagtaccaaagtgctcatagtgcaggtagtttgg 40
>RF00051;mir-17;AAIY01238597.1/3382-3300 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 83
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctagcagtatcaaagtgctcatagtgcaggtag 33
||||| ||| |||||||||||||||||||||||
Sbjct: 3 ctagcggtaccaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AAGW01169230.1/2042-2124 9986:Oryctolagus
cuniculus (rabbit)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 agtatcaaagtgctcatagtgcaggtag 33
|||| |||||||||||||||||||||||
Sbjct: 8 agtaccaaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AAFR03056382.1/2050-2132 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtag 35
>RF00051;mir-17;AABR04092601.1/7810-7728 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtag 35
>RF00051;mir-17;BX571778.7/42610-42528 10090:Mus musculus (house
mouse)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caaagtgctcatagtgcaggtag 33
|||||||||||||||||||||||
Sbjct: 13 caaagtgctcatagtgcaggtag 35
>RF00051;mir-17;CAAK05051440.1/15885-15799 7955:Danio rerio
(zebrafish)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 agcagtatcaaagtgctcatagtgcaggtag 33
|||||||| |||||||| |||||||||||||
Sbjct: 5 agcagtattaaagtgcttatagtgcaggtag 35
>RF00051;mir-17;CAAB01000095.1/4903-4823 31033:Takifugu rubripes
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 agcagtatcaaagtgctcatagtgcaggtag 33
|||||||| |||||||| |||||||||||||
Sbjct: 5 agcagtattaaagtgcttatagtgcaggtag 35
>RF00051;mir-17;FP015951.3/28915-28833 9823:Sus scrofa (pig)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 gcagtatcaaagtgctcatagtgcaggtag 33
|||||| ||||||||||| |||||||||||
Sbjct: 6 gcagtaccaaagtgctcacagtgcaggtag 35
