miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00658;mir-21;AADN02025785.1/47934-47863 9031:Gallus gallus
(chicken)
Length = 72
Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>RF00658;mir-21;CAAB01003431.1/24512-24584 31033:Takifugu rubripes
Length = 73
Score = 60.0 bits (30), Expect = 6e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 16 gatagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggct 74
||||||||||||||||| ||||| ||||| || || |||||||||| ||||| ||| |||
Sbjct: 6 gatagcttatcagactggtgttggctgttaggttcccatggcaacagcagtctgtaagct 65
Query: 75 gtctga 80
||||||
Sbjct: 66 gtctga 71
>RF00658;mir-21;BAAF04044466.1/2035-1963 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggt 69
|||| ||||||||||||||||| ||||| ||||| ||| || ||| ||||||||| ||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 70 aggctgtctgaca 82
|||||||||||||
Sbjct: 61 aggctgtctgaca 73
>RF00658;mir-21;AAVX01193435.1/262-191 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||| ||||||||||||||||| ||||| ||||| | || |||| |||||||| ||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttagctcaggtggcgacaacagttggta 60
Query: 71 ggctgtctg 79
|||| ||||
Sbjct: 61 ggctatctg 69
