miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 149 bits (75), Expect = 7e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 60
Query: 66 gattaccacatagcc 80
|||||||||||||||
Sbjct: 61 gattaccacatagcc 75
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 9 ctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggat 68
|||| ||||||||||||||| |||||||||| | |||| ||||||||||||||||||||
Sbjct: 4 ctgtgtgggttcctggcatgctgatttgtgacatgagataaaaatcacattgccagggat 63
Query: 69 taccacatagcc 80
|||||| |||||
Sbjct: 64 taccacgtagcc 75
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 14 tgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattacca 73
||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||
Sbjct: 9 tgggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataacca 68
Query: 74 c 74
|
Sbjct: 69 c 69
>RF00642;mir-23;AAYZ01075783.1/3205-3279 9978:Ochotona princeps
(American pika)
Length = 75
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||| ||||||||||| |||||||||| || ||||||||| |||||||||||
Sbjct: 1 tggctgcttggcttcctggcatgctgatttgtgacttcagattaaaacgacattgccagg 60
Query: 66 gattaccac 74
|||||||||
Sbjct: 61 gattaccac 69
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 75.8 bits (38), Expect = 8e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
||||||||||| || |||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcgtgctgatttgtgacttatgat-aaaatcacattgccagggattaccac 68
Query: 75 atagcc 80
| ||||
Sbjct: 69 acagcc 74
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 69.9 bits (35), Expect = 5e-12
Identities = 62/69 (89%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 6 tggctgtttgggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagg 65
|||||| |||||||||||||||| |||||||||| | |||| ||||||||||||||||
Sbjct: 1 tggctgcttgggttcctggcatgctgatttgtgact--agat--aaatcacattgccagg 56
Query: 66 gattaccac 74
|||||||||
Sbjct: 57 gattaccac 65
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccaca 75
|||||||||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggattaccaca 73
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 taaaatcacattgccagggattacca 73
||||||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggattacca 68
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 aaatcacattgccagggattacca 73
||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggattacca 68
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 taaaatcacattgccagggatt 69
||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggatt 64
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 48 aaaatcacattgccagggatttccac 73
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 aaaatcacattgccagggattaccac 74
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
