miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 2 tcacctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggtt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcacctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggtt 60
Query: 62 acttgcactgggag 75
||||||||||||||
Sbjct: 61 acttgcactgggag 74
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 77.8 bits (39), Expect = 2e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 63
||||| |||||||||||||||||||||||| | ||||| | |||||||| |||| ||||
Sbjct: 3 acctgcttcaagtaatccaggataggctgtgtgcattcttaatggcctatccttgattac 62
Query: 64 ttgcactggga 74
|||||||||||
Sbjct: 63 ttgcactggga 73
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgtatccattc 41
||||||||||||||||||||||||||||| | ||||||
Sbjct: 3 acctggttcaagtaatccaggataggctggacccattc 40
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 63
|||||||||||||||||||||||||||| | | | | | |||||| |||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 62
Query: 64 ttgcactggg 73
||||||||||
Sbjct: 63 ttgcactggg 72
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 acctggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||||||
Sbjct: 3 acctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttacttgca 68
||||||||||||||||||||||||| | || | | |||||||||| || |||||||||
Sbjct: 8 gttcaagtaatccaggataggctgtttgtatcctggttggcctattcatgattacttgca 67
Query: 69 ctggg 73
|||||
Sbjct: 68 ctggg 72
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctg 32
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 6 ctggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||||
Sbjct: 5 ctggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggctg 32
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggctgtatcca 38
|||||||||||||||||||||||||| ||||
Sbjct: 7 ggttcaagtaatccaggataggctgtgtcca 37
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggataggct 31
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgtatccat 39
|||||||||||||||||||||||| |||||
Sbjct: 9 ttcaagtaatccaggataggctgtttccat 38
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
|||||||||||||||||||||||||
Sbjct: 8 gttcaagtaatccaggataggctgt 32
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggatagg 29
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggatagg 29
|||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggctgt 33
||||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgt 32
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggct 31
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggct 31
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggct 31
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 ggttcaagtaatccaggataggct 31
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttcaagtaatccaggataggct 31
||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggct 30
>RF00244;mir-26;ABRQ01183794.1/1462-1535 9813:Procavia capensis
(cape rock hyrax)
Length = 74
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 gttcaagtaatccaggataggctgt 33
||||||||||||||||| |||||||
Sbjct: 8 gttcaagtaatccaggacaggctgt 32
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 cctggttcaagtaatccaggatagg 29
|||| ||||||||||||||||||||
Sbjct: 4 cctgattcaagtaatccaggatagg 28
